Archive for the ‘Stock Matlab function’ Category

The javacomponent function

Wednesday, August 4th, 2010

In this blog I have often showed how using Java components can significantly improve Matlab GUI. Here is a simple reminder:

sample Java components integrated in Matlab figure window (click for details)

sample Java components integrated in Matlab figure window (click for details)

Matlab is highly integrated with Java, and Java classes can seamlessly be accessed from Matlab. However, displaying Java GUI objects, as opposed to using computational (non-displayable) Java classes, requires using Matlab’s built-in javacomponent function. I have often used this function in past articles here, and today I would like to describe it in more detail.

javacomponent, available since R14 (Matlab 7.0), is yet another semi-documented built-in function. This means that the function is explained in a comment within the function (which can be seen via the edit(‘javacomponent’) command), but nonetheless does not have official help or doc pages. It is an unsupported function originally intended only for internal Matlab use (which of course doesn’t mean we can’t use it).

javacomponent accepts a component class name (a string) or a reference to a previously-created component object, an optional pixel position parameter (default=[20,20,60,20], just like uicontrol; may also contain the strings ‘North’, ‘South’, ‘East’ or ‘West’), and an optional parent container handle (defaults to the current figure). javacomponent then adds the requested component as a child of the requested parent container and wraps it in a Matlab Handle-Graphics (HG) container. javacomponent returns two handles: the Matlab HG container handle and a reference (handle) to the Java component. Here are some sample invocation formats:

>> [jButton, hButton] = javacomponent('javax.swing.JButton')
hButton =
	javahandle_withcallbacks.javax.swing.JButton
jButton =
          158.002197265625
 
>> javacomponent('javax.swing.JButton','North');
>> javacomponent(javax.swing.JButton('Click me!'),[50,40,80,30]);
>> javacomponent(javax.swing.JButton('Click me!'),'East',hFig);

Note the difference between Java object creation and javacomponent: A pre-created Java object only resides in JVM (Java Virtual Machine) memory, not onscreen, until javacomponent is called to display it. javacomponent only creates objects when a class name (string) parameter is passed to it, as a convenience service to programmers. In practice, it is better to separate these two actions: create the Java object separately, and then pass the object’s reference handle to javacomponent for display. This enables easier error-trapping if the Java object cannot be created or fails to initialize, before attempting to display the object:

% Create and initialize a JScrollBar object
try
   jScrollbar = javaObjectEDT('javax.swing.JScrollBar');
   jScrollbar.setOrientation(jScrollbar.HORIZONTAL);
catch
   error('Cannot create Java-based scroll-bar!');
end
% Display the object onscreen
try
   javacomponent(jScrollbar,'South');
catch
   error('Cannot display Java-base scroll-bar!');
end

Note that Java GUI object should always use the EDT (Event Dispatch Thread). The reasons for this were outlined in the recent Matlab-EDT article. For this reason, the JScrollBar is created using the built-in javaObjectEDT function, which exists since R2008a and became documented/supported in R2009a.

javacomponent accepts parent handles that are figures, toolbars, uipanels or uicontainers. Unfortunately, frames are not uicontainers and therefore cannot be used as javacomponent parents. Addendum Aug 6 2010: I made an incorrect statement in the original post here regarding uipanels, which has now been removed. I thank the reader who pointed this out to me.

Once the component has been created, even before it has been placed onscreen, it can be manipulated just like any other Java object. For example:

jButton.setText('Click again!');  % or: set(jButton,'text','…')

The component can also be manipulated to some extent via its HG container, which is of a special Matlab type (class) called hgjavacomponent. This includes getting/setting the component position, position units, visibility, resizing callback, tag, UserData etc:

set(hButton,'units','norm', 'position',[0.2,0.3,0.1,0.05]);
set(hButton,'visible','off'); %note: on/off, not true/false as in Java
set(hButton,'ResizeFcn',{@resizeCallbackFunc,param1,param2});

When adding Java components which are container classes (descendants of java.awt.Container), it is important to remember that only other Java components can be added to these containers. Matlab objects such as axes (for plots or images) and uicontrols cannot be added since they do not have a Container wrapper. Therefore, feel free to use these Java containers as long as their contained GUI is limited to Java components (JButton, JComboBox etc.). This limitation is very annoying – it would be very useful to be able to place Matlab axes or uicontrols within a JTabbedPane or JSplitPane. Instead, we need to rely on Matlab-based workarounds (uitab and uisplitpane) which are cumbersome compared to their Java counterparts.

javacomponent can be used to place not only Swing components but also Swing-extended components onscreen. Matlab itself almost never uses Swing components as-is, instead preferring to use MathWorks-derived extensions of these components, generally in the com.mathworks.mwswing or com.mathworks.widgets packages. These packages and their classes are all in the static Java classpath and are therefore automatically available for use by Matlab programmers.

Just like Matlab components, javacomponent can also display third-party or your own Swing-derived components. There are quite a few online sources for Swing components that can easily be incorporated in your Matlab application. Simply download the relevant class files, add them to your static (via classpath.txt) or dynamic (via javaaddpath) Java classpath, use javacomponent to display them, then use their reference handle to manipulate their appearance and behavior.

javacomponent, useful as it is, has several limitations. In its string variant (classname) it requires a fully-qualified classname that is not inferred automatically. It also has a different parameters format than uicontrol, which may confuse users. javacomponent also cannot display java.awt.Window components. Finally, it returns two handles – one is a handle() reference of the Java object; the second an HG handle (a double numeric value) of the automatically-created HG container – users are often confused as to which property should be set on which of these handles.

To overcome these limitations, I created UIComponent – a utility that merges uicontrol and javacomponent, available for download on the File Exchange. It accepts all uicontrol parameters and styles, as well as any other displayable Java (Swing/AWT) class. uicontrol’s calling syntax was preserved for full backwards compatibility. uicomponent uses the built-in uicontrol whenever possible (for standard Matlab styles), and javacomponent for all other Java classes.

uicomponent returns the same two handles that javacomponent returns (namely, a Java reference handle and a numeric HG handle), modified to include each other’s properties and handles (yet another undocumented trick that merits a dedicated article). Here are some examples (more can be found in uicomponent’s help comment):

uicomponent('style','edit', 'String','hello');  % a regular uicontrol
uicomponent(hFig, 'style','edit', 'String','hello'); % specify parent
uicomponent('style','jspinner','value',7);
uicomponent('style','javax.swing.jslider','tag','myObj'); 
uicomponent('style','JComboBox',{1,pi,'text'},'editable',true);

Another File Exchange submission which aims to tackle some of javacomponent’s limitations is Malcolm Lidierth’s JCONTROL. jcontrol uses Matlab’s new object-oriented class approach and has the benefit of returning just a single handle object, which aggregates the handles for both HG container and the contained Java object.

COM/ActiveX tips & tricks

Wednesday, July 28th, 2010

Matlab’s COM/ActiveX interface has been supported and well-documented for many releases. However, there are still some aspects that are either not detailed, or that escape the casual documentation reader.

Accessing collection items

COM collections is a COM interface for sets of similar objects such as the worksheets in an Excel file or the images in a PowerPoint document. The items in a collection can be accessed using a numeric index (starting at 1) or the item’s string name.

The “normal” way to access collection items is using the Item() method that accepts a numeric index or the item’s name (a string).

Since collections are so common, Microsoft devised a short-cut of passing the parameter directly to the collection. For example, in our Excel VB code, instead of using Worksheets.Item(2) or Worksheets.Item(‘Sheet2′), we could write Worksheets(2) or Worksheets(‘Sheet2′). This shortcut is so common that the “normal” way of using Item() is rarely seen.

Unfortunately, Matlab’s implementation of the COM interface does not recognize this shortcut. Instead, we must use the more verbose way of using the Item():

% Invalid - shortcut is not recognized by Matlab
>> hSheet = hWorkbook.Worksheets(2);
??? Index exceeds matrix dimensions
 
% Valid
>> hSheet = hWorkbook.Worksheets.Item(2);
>> hSheet = hWorkbook.Worksheets.Item('Sheet2')
hSheet =
	Interface.Interface.Microsoft_Excel_11.0_Object_Library._Worksheet

Note that the dot-notation used above only works on recent Matlab 7 releases. Earlier releases (for example, Matlab 6.0 R12) have bugs that prevent it from functioning properly. The workaround is to use the following even-more-verbose way, which work on all Matlab releases:

hSheet = invoke(get(hWorkbook,'Worksheets'),'Item',2);

Matlab’s documentation actually has a short section describing the valid way to access COM collection. IMHO, a special warning about the invalid but widely-used short-cut would have been useful. In any case, the issue of accessing collection items has often appeared on CSSM (for example, here and here), so I guess many programmers have overlooked this.

Using enumerated values

When setting COM property values, Matlab supports some enumerated (constant) values but not all (read here). In practice, this can be very frustrating since the VB code and documentation almost always refers to the enumerated values only. Without the ability to set enumeration values, some properties become unusable in Matlab.

Well, not really. There’s a workaround: Since every enumerated COM value hides a numeric value, we can pass the numeric values rather than the enumerated (string) value when setting such properties. The numeric values are seldom documented, but can often be easily found online (use Google!). Quite often, they appear in C header-files that #define the enumerated values as pre-processor items with the required numeric value. For example, the numeric value for xlXYScatterLines is easily found to be 74.

Some of the enumerated constants are harder to find in this manner. You can use one of the following resources to search for your requested constant: Excel, PowerPoint (or here), OLE/Office (includes Word, Access and Internet Explorer), and an even larger list.

Again, old Matlab versions have problems understanding string enumerations, but the numeric values are always accepted and so are backward-compatible. If your application needs to support old Matlab versions, always use the numeric values (add a comment with the enumerated name, for maintainability).

Office 2010

Microsoft Office 2010 has apparently changed its COM interface, so accessing it from Matlab cannot easily be done. Luckily, Samuel Foucher has posted a workaround to this problem on CSSM yesterday. The trick is basically to have both an older Office and Office 2010 installed at the same time. As Samuel notes, “This is far from an optimal solution but it seems to work so far“.

Plot performance

Wednesday, June 16th, 2010

I recently consulted to a client who wanted to display an interactive plot with numerous data points that kept updating in real-time. Matlab’s standard plotting functions simply could not keep up with the rate of data change. Today, I want to share a couple of very simple undocumented hacks that significantly improve plotting performance and fixed my problem.

I begin by stating the obvious: whenever possible, try to vectorize your code, preallocate the data and other performance-improving techniques suggested by Matlab. Unfortunately, sometimes (as in my specific case above) all these cannot help. Even in such cases, we can still find important performance tricks, such as these:

Performance hack #1: manual limits

Whenever Matlab updates plot data, it checks whether any modification needs to be done to any of its limits. This computation-intensive task is done for any limit that is set to ‘Auto’ mode, which is the default axes limits mode. If instead we manually set the axes limits to the requested range, Matlab skips these checks, enabling much faster plotting performance.

Let us simulate the situation by adding 500 data points to a plot, one at a time:

>> x=0:0.02:10; y=sin(x);
>> clf; cla; tic;
>> drawnow; plot(x(1),y(1)); hold on; legend data;
>> for idx = 1 : length(x); plot(x(idx),y(idx)); drawnow; end;
>> toc
 
Elapsed time is 21.583668 seconds.

simple plot with 500 data points

simple plot with 500 data points

And now let’s use static axes limits:

>> x=0:0.02:10; y=sin(x);
>> clf; cla; tic; drawnow; 
>> plot(x(1),y(1)); hold on; legend data;
 
>> xlim([0,10]); ylim([-1,1]);  % static limits
 
>> for idx = 1 : length(x); plot(x(idx),y(idx)); drawnow; end;
>> toc
 
Elapsed time is 16.863090 seconds.

Note that this trick is the basis for the performance improvement that occurs when using the plot’s undocumented set of LimInclude properties.

Of course, setting manual limits prevents the axes limits from growing and shrinking automatically with the data, which can actually be a very useful feature sometimes. But if performance is important, we now know that we have this tool to improve it.

Performance hack #2: static legend

Hack #1 gave us a 22% performance boost, but we can do much better. Running the profiler on the code above we see that much of the time is spent recomputing the legend. Looking inside the legend code (specifically, the legendcolorbarlayout function), we detect several short-circuits that we can use to make the legend static and prevent recomputation:

>> x=0:0.02:10; y=sin(x);
>> clf; cla; tic; drawnow; 
>> plot(x(1),y(1)); hold on; legend data;
 
>> xlim([0,10]); ylim([-1,1]);  % static limits
 
>> % Static legend
>> set(gca,'LegendColorbarListeners',[]); 
>> setappdata(gca,'LegendColorbarManualSpace',1);
>> setappdata(gca,'LegendColorbarReclaimSpace',1);
 
>> for idx = 1 : length(x); plot(x(idx),y(idx)); drawnow; end;
>> toc
 
Elapsed time is 5.209053 seconds.

Now this is much much better – a 76% performance boost compared to the original plot (i.e., 4 times faster!). Of course, it prevents the legend from being dynamically updated. Sometimes we actually wish for this dynamic effect (last year I explained how to use the legend’s undocumented -DynamicLegend feature for even greater dynamic control). But when performance is important, we can still display a legend without its usual performance cost.

In conclusion, I have demonstrated that Matlab performance can often be improved significantly, even in the absence of any vectorization, by simply understanding the internal mechanisms and bypassing those which are irrelevant in our specific case.

Have you found other similar performance hacks? If so, please share them in the comments section below.

Modifying default toolbar/menubar actions

Wednesday, June 2nd, 2010

Did you ever wish to modify Matlab’s default toolbar/menubar items?

I recently consulted to a client who needed to modify the default behavior of the legend action in the toolbar, and the corresponding item on the main menu (Insert / Legend). The official version is that only user-added items can be customized, whereas standard Matlab items cannot.

Luckily, this can indeed be done using simple pure-Matlab code. The trick is to get the handles of the toolbar/menubar objects and then to modify their callback properties.

Default legend insertion action

Default legend insertion action

Using the toolbar/menubar item handles

Getting the handles can be done in several different ways. In my experience, using the object’s tag string is often easiest, fastest and more maintainable. Note that the Matlab toolbar and main menu handles are normally hidden (HandleVisibility = ‘off’). Therefore, in order to access them we need to use the findall function rather than the better-known findobj function. Also note that to set the callbacks we need to access differently-named properties: ClickedCallback for toolbar buttons, and Callback for menu items:

hToolLegend = findall(gcf,'tag','Annotation.InsertLegend');
set(hToolLegend, 'ClickedCallback',{@cbLegend,hFig,myData});
 
hMenuLegend = findall(gcf,'tag','figMenuInsertLegend');
set(hMenuLegend, 'Callback',{@cbLegend,hFig,myData});

As a side note, two undocumented/unsupported functions, uitool(hFig,tagName) and uigettoolbar, also retrieve toolbar items. Since using findall is so simple and more supported, I suggest using the findall approach.

To see the list of available toolbar/menubar tags, use the following code snippet:

% Toolbar tag names:
>> hToolbar = findall(gcf,'tag','FigureToolBar');
>> get(findall(hToolbar),'tag')
ans = 
    'FigureToolBar'
    'Plottools.PlottoolsOn'
    'Plottools.PlottoolsOff'
    'Annotation.InsertLegend'
    'Annotation.InsertColorbar'
    'DataManager.Linking'
    'Exploration.Brushing'
    'Exploration.DataCursor'
    'Exploration.Rotate'
    'Exploration.Pan'
    'Exploration.ZoomOut'
    'Exploration.ZoomIn'
    'Standard.EditPlot'
    'Standard.PrintFigure'
    'Standard.SaveFigure'
    'Standard.FileOpen'
    'Standard.NewFigure'
    ''
 
% Menu-bar tag names:
>> get(findall(gcf,'type','uimenu'),'tag')
ans = 
    'figMenuHelp'
    'figMenuWindow'
    'figMenuDesktop'
    'figMenuTools'
    'figMenuInsert'
    'figMenuView'
    'figMenuEdit'
    'figMenuFile'
    'figMenuHelpAbout'
    'figMenuHelpPatens'
    'figMenuHelpTerms'
    'figMenuHelpActivation'
    'figMenuDemos'
    'figMenuTutorials'
    'figMenuHelpUpdates'
    'figMenuGetTrials'
    'figMenuWeb'
    'figMenuHelpPrintingExport'
    'figMenuHelpAnnotatingGraphs'
    'figMenuHelpPlottingTools'
    'figMenuHelpGraphics'
    ''
    ''                    <= Note the missing tag names...
    ''
    'figMenuToolsBFDS'    <= note the duplicate tag names...
    'figMenuToolsBFDS'
    'figDataManagerBrushTools'
    'figMenuToolsAlign'
    'figMenuToolsAlign'
    ... (plus many many more...)

Unfortunately, as seen above, Matlab developers forgot to assign tags to some default toolbar/menubar items. Luckily, in my particular case, both legend handles (toolbar, menu) have valid tag names that can be used: ‘Annotation.InsertLegend’ and ‘figMenuInsertLegend’.

If an item’s tag is missing, you can always find its handle using its Parent, Label, Tooltip or Callback properties. For example:

hPrintMenuItem = get(findall(gcf,'Label','&Print...'));

Note that property values, such as the tag names or labels, are unsupported and undocumented. They may change without warning or notice between Matlab releases, and have indeed done so in the past. Therefore, if your code needs to be compatible with older Matlab releases, ensure that you cover all the possible property values, or use a different way to access the handles. While using the tag name or label as shown above is considered “Low risk” (I don’t expect it to break in the near future), their actual values should be considered somewhat more risky and we should therefore code defensively.

Another simple example: Print Preview

As another simple and very useful example, let’s modify the default Print action (and tooltip) on the figure toolbar to display the Print-Preview window rather than send the figure directly to the printer:

Matlab's default toolbar Print action

Matlab's default toolbar Print action

hToolbar = findall(gcf,'tag','FigureToolBar');
hPrintButton = findall(hToolbar,'tag','Standard.PrintFigure');
set(hPrintButton, 'ClickedCallback','printpreview(gcbf)', ...
                  'TooltipString','Print Preview');

Matlab's Print Preview window

Matlab's Print Preview window

More advanced customization of the toolbar and menu items are possible, but require a bit of Java code. Examples of toolbar customizations were presented in past articles (here and here). A future article will explain how to customize menu items.

Have you found a nifty way to customize the menubar or toolbar? If so, please share it in the comments section below.

Image Easter egg

Tuesday, April 6th, 2010

Last year I presented the Matlab Spy Easter egg for the 2009 Easter holiday. This year, slightly late, I present another Easter egg in the well-known image function: When we run image with no input arguments, we get a default image of an inverted boy:

image;

Default image

Default image

To see the image right-side up:

image;
colormap(gray(32));
axis ij image off

Corrected default image

Corrected default image

In fact, it turns out that there are quite a few hidden super-imposed images here, and that there is an interesting story behind them, which was explained by Steve Eddins in his Image Processing blog. For those interested, the boy above is Steve’s eldest, but that’s only a small part of the story…

Happy Holiday!

Yair

p.s. – The default image has not changed in many years. I guess the boy should be in high school or college by now. Perhaps it’s time to post an updated picture in the R2010b release, Steve?

Plot LimInclude properties

Wednesday, March 31st, 2010

Concluding my three-part mini-series on hidden and undocumented plot/axes properties, I would like to present a set of properties that I find very useful in dynamic plots: XLimInclude, YLimInclude, ZLimInclude, ALimInclude and CLimInclude. These properties, which are relevant for plot/axes objects, have an ‘on’ value by default. When set to ‘off’, they exclude their object from the automatic computation of the corresponding axes limits (XLim/YLim/ZLim/ALim/CLim).

For example, here’s a simple sine wave with a wavefront line marker. Note how the too-tall wavefront line affects the entire axes Y-limits:

cla;
t=0:.01:7.5;
plot(t,sin(t));
line('xdata',[7.5,7.5], 'ydata',[-5,5], 'color','r'); 
box off

Regular plot (YLimInclude on)

Regular plot (YLimInclude on)

This situation is quickly fixed using the YLimInclude property:

cla;
t=0:.01:7.5;
plot(t,sin(t));
line('xdata',[7.5,7.5], 'ydata',[-5,5], 'color','r', ...
     'YLimInclude','off'); 
box off

YLimInclude off

YLimInclude off

Beside the functional importance of this feature, it also has a large potential for improved application performance: I recently designed a monitor-like GUI for a medical application, where the data is constantly updated from an external sensor connected to the computer. The GUI presents the latest 10 seconds of monitored data, which bounce up and down the chart. A red wave-front line is presented and constantly updated, to indicate the current data position. Since the monitored data jumps up and down, the Y-limits of the monitor chart often changes, and with it I would need to modify the wavefront’s YData based on the updated axes YLim. This turned out to steal precious CPU time from the actual monitoring application. Came YLimInclude to the rescue, by letting me specify the wavefront line as:

hWavefront = line(..., 'YData',[-99,99], 'YLimInclude','off');

Now the wavefront line never needed to update its YData (only XData, which is much less CPU-intensive) – it always spanned the entire axes height, since [-99,99] were assured (in my particular case) to exceed the actual monitored data. This looked better (no flicker effects) and performed faster than the regular (documented) approach.

Note that although all these properties exist, to the best of my knowledge, for all Handle-Graphic plot objects, they are sometimes meaningless. For example, ZLimInclude is irrelevant for a 2D patchless plot; CLimInclude relates to the axes color limits which are irrelevant if you’re not using a colormap or something similar; ALimInclude relates to patch transparency (alpha-channel) and is irrelevant elsewhere. In these and similar cases, setting these properties, while allowed and harmless, will simply have no effect.

This concludes my mini-series of undocumented plot/axes properties. To recap, the other articles dealt with the LooseInset and LineSmoothing properties.

Have you found other similar properties or use-cases that you find useful? I will be most interested to read about them in the comments section below.

Inactive Control Tooltips & Event Chaining

Wednesday, February 24th, 2010

Once again, I welcome guest blogger Matt Whitaker, who continues his series of articles.

In my last post I explored some tips on tooltips. One of these tips involved displaying tooltips on disabled uicontrols. I explained that displaying tooltips on inactive controls is problematic since Matlab appears to intercept mouse events to these inactive controls, so even setting the tooltip on the underlying Java object will not work: The java object appears not to receive the mouse-hover event and therefore does not “know” that it’s time to display the tooltip.

When Yair and I deliberated this issue, he pointed me to his comment on a previous article showing an undocumented Java technique (Java also has some…) for forcing a tooltip to appear using the ActionMap of the uicontrol’s underlying Java object to get at a postTip action. We discussed using a WindowButtonMotionFcn callback to see if the mouse was above the inactive control, then triggering the forced tooltip display. Yair then went on to remind me and I quote: “you’ll need to chain existing WindowButtonMotionFcn callbacks and take into account ModeManagers that override them.”

Frankly, having written code previously that handles callback chaining, I would rather poke myself in the eye with a fork!

The Image Processing Toolbox has the nice pair of iptaddcallback and iptremovecallback functions that largely handle these issues. But for general Matlab, there seemed to be no alternative until I remembered that events trigger callbacks. I decided to use a listener for the WindowButtonMotion event to detect the mouse motion. Event listeners were briefly explained two weeks ago and deserve a dedicated future article. The advantage of using an event listener is that we don’t disturb any existing WindowButtonMotionFcn callback. We still need to be somewhat careful that our listeners don’t do conflicting things, but it’s a lot easier than trying to manage everything through the single WindowButtonMotionFcn.

A demonstration of this appears below with some comments following (note that this code uses the FindJObj utility):

function inactiveBtnToolTip
  %Illustrates how to make a tooltip appear on an inactive control
  h = figure('WindowButtonMotionFcn',@windowMotion,'Pos',[400,400,200,200]);
  col = get(h,'color');
  lbl = uicontrol('Style','text', 'Pos',[10,160,120,20], ...
                  'Background',col, 'HorizontalAlignment','left');
  btn = uicontrol('Parent',h, 'String','Button', ...
                  'Enable','inactive', 'Pos',[10,40,60,20]);
  uicontrol('Style','check', 'Parent',h, 'String','Enable button tooltip', ...
            'Callback',@chkTooltipEnable, 'Value',1, ...
            'Pos',[10,80,180,20], 'Background',col);
  drawnow;
 
  %create the tooltip and postTip action
  jBtn = findjobj(btn);
  import java.awt.event.ActionEvent;
  javaMethodEDT('setToolTipText',jBtn,'This button is inactive');
  actionMap = javaMethodEDT('getActionMap',jBtn);
  action = javaMethodEDT('get',actionMap,'postTip');
  actionEvent = ActionEvent(jBtn, ActionEvent.ACTION_PERFORMED, 'postTip');
 
  %get the extents plus 2 pixels of the control to compare to the mouse position
  btnPos = getpixelposition(btn)+[-2,-2,4,4]; %give a little band around the control
  left = btnPos(1);
  right = sum(btnPos([1,3]));
  btm = btnPos(2);
  top =  sum(btnPos([2,4]));
 
  % add a listener on mouse movement events
  tm = javax.swing.ToolTipManager.sharedInstance; %tooltip manager
  pointListener = handle.listener(h,'WindowButtonMotionEvent',@figMouseMove);
 
  %inControl is a flag to prevent multiple triggers of the postTip action
  %while mouse remains in the button
  inControl = false;
 
  function figMouseMove(src,evtData) %#ok
    %get the current point
    cPoint = evtData.CurrentPoint;
 
    if cPoint(1) >= left && cPoint(1) <= right &&...
       cPoint(2) >= btm  && cPoint(2) <= top
 
      if ~inControl %we just entered
        inControl = true;
        action.actionPerformed(actionEvent); %show the tooltip
      end %if
    else
      if inControl %we just existed
        inControl = false;
        %toggle to make it disappear when leaving button
        javaMethodEDT('setEnabled',tm,false);
        javaMethodEDT('setEnabled',tm,true);
      end %if
    end %if
  end %gpMouseMove
 
  function windowMotion(varargin)
    %illustrate that we can still do a regular window button motion callback
    set(lbl,'String',sprintf('Mouse position: %d, %d',get(h,'CurrentPoint')));
    drawnow;
  end %windowMotion
 
  function chkTooltipEnable(src,varargin)
    if get(src,'Value')
      set(pointListener,'Enable','on');
    else
      set(pointListener,'Enable','off');
    end %if
  end %chkTooltipEnable
end %inactiveBtnToolTip

Tooltip on an inactive button

Tooltip on an inactive button

Comments on the code:

  1. The code illustrates that we can successfully add an additional listener to listen for mouse motion events while still carrying out the original WindowButtonMotionFcn callback. This makes chaining callbacks much easier.
  2. The handle.listener object has an Enable property that we can use to temporarily turn the listener on and off. This can be seen in the chkTooltipEnable() callback for the check box in the code above. If we wanted to permanently remove the listener we would simply use delete(pointListener). Note that addlistener adds a hidden property to the object being listened to, so that the listener is tied to the object’s lifecycle. If you create a listener directly using handle.listener you are responsible for it’s disposition. Unfortunately, addlistener fails for HG handles on pre-R2009 Matlab releases, so we use handle.listener directly.
  3. The code illustrates a good practice when tracking rapidly firing events like mouse movement of handling reentry into the callback while it is still processing a previous callback. Here we use a flag called inControl to prevent the postTip action being continuously fired while the mouse remains in the control.
  4. I was unable to determine if there is any corresponding action for the postTip to dismiss tips so I resorted to using the ToolTipManager to toggle its own Enable property to cleanly hide the tooltip as the mouse leaves the control.

Each Matlab callback has an associated event with it. Some of the ones that might be immediately useful at the figure-level are WindowButtonDown, WindowButtonUp, WindowKeyPress, and WindowKeyRelease. They can all be accessed through handle.listener or addlistener as in the code above.

Unfortunately, events do not always have names that directly correspond to the callback names. In order to see the list of available events for a particular Matlab object, use the following code, which relies on another undocumented function – classhandle. Here we list the events for gcf:

>> get(get(classhandle(handle(gcf)),'Events'),'Name')
ans = 
    'SerializeEvent'
    'FigureUpdateEvent'
    'ResizeEvent'
    'WindowKeyReleaseEvent'
    'WindowKeyPressEvent'
    'WindowButtonUpEvent'
    'WindowButtonDownEvent'
    'WindowButtonMotionEvent'
    'WindowPostChangeEvent'
    'WindowPreChangeEvent'

Note that I have made extensive use of the javaMethodEDT function to execute Java methods that affect swing components on Swing’s Event Dispatch Thread. I plan to write about this and related functions in my next article.

Solving a MATLAB bug by subclassing

Sunday, February 7th, 2010

I would like to welcome guest blogger Matthew Whitaker. Many of Matt’s CSSM submissions offer important insight of internal Matlab functionality. As shall be seen by today’s article and some future submissions, Matt has plenty to share vis-a-vis Matlab’s undocumented functionality.

In my day-to-day work I make extensive use of MATLAB’s Image Processing Toolbox (IPT). One area of the toolbox that has seen considerable change over the last few releases has been the development of a set of modular tools to aid in GUI design for image processing applications. In this article, I examine a bug in one of those tools to illustrate how we can use the power of subclassing these objects (using an undocumented property) to design a simple and effective workaround.

The problem

The problem arose as I was refactoring some code that was written in R2006b to R2009b. The code in question uses the impoint tool on an image along with an associated text object that moves with the point to display information as it is dragged around the image. At the time of the R2006b release the impoint tool was written as an API. In R2006b the call to impoint returns a handle to an hggroup containing a structure of function handles in its application data under the tag ‘API’. This programming pattern was common before the advent of the new class syntax in MATLAB version 7.6 (R2008a).

Here is an example of how impoint would be used in R2006b:

function impointBehavior_R2006b
%IMPOINTBEHAVIOR_R2006B shows how impoint would be used in R2006b
%Note: RUN UNDER R2006B (will run under R2009b but actually uses
%classdef impoint so it will show the same issue)
 
  % Display the image in a figure window
  figure;  imshow('rice.png');
 
  % In R2006b calling impoint returns the hggroup handle
  h = impoint(gca,100,200);
 
  % In 2006b iptgetapi returns a structure of function handles
  api = iptgetapi(h);
 
  % Add a new position callback to set the text string
  api.addNewPositionCallback(@newPos_Callback);
 
  % Construct boundary constraint function so we can't go outside the axes
  fcn = makeConstrainToRectFcn('impoint',get(gca,'XLim'),get(gca,'YLim'));
  api.setDragConstraintFcn(fcn);
 
  % Fire callback so we get initial text
  newPos_Callback(api.getPosition());
 
  function newPos_Callback(newPos)
    % Display the current point position in a text label
    api.setString(sprintf('(%1.0f,%1.0f)',newPos(1),newPos(2)));
  end %newPos_Callback
 
end %impointBehavior_R2006b

The code above, when run in R2006b, produces the desired behavior of displaying a text object containing the point coordinates that moves around with the point as it is dragged around the axes.

In R2009b, impoint is now a true MATLAB class using the new classdef syntax, so I wanted to update the existing code. Initially this appeared to be a straightforward translation of the code to make use of the new impoint class syntax. The first attempt to rewrite the code was:

function impointBehavior_R2009b
%IMPOINTBEHAVIOR_R2009B shows the undesirable behavior when
%using the setString method in R2009b. 
 
  % Display the image in a figure window
  figure;  imshow('rice.png');
  h = impoint(gca,100,200);
 
  % Add a new position callback to set the text string
  h.addNewPositionCallback(@newPos_Callback);
 
  % Construct boundary constraint function so we can't go outside the axes
  fcn = makeConstrainToRectFcn('impoint',get(gca,'XLim'),get(gca,'YLim'));
 
  % Enforce boundary constraint function
  h.setPositionConstraintFcn(fcn);
 
  % Fire callback so we get initial text
  newPos_Callback(h.getPosition());
 
  function newPos_Callback(newPos)
    % Display the current point position in a text label
    h.setString(sprintf('(%1.0f,%1.0f)',newPos(1),newPos(2)))
  end %newPos_Callback
 
end %impointBehavior_R2009b

Unfortunately, when this code is run, dragging the mouse around the axes produces a trail of labels as shown below:

Before - buggy behavior

Before - buggy behavior

Opening up impoint.m in the editor and tracing the code revealed that impoint’s setString method creates a new text object each time it is used. I reported this to MATLAB and the bug is now documented on the MathWorks Support site (574846).

The solution

So how do we work around this bug to get to the behavior we want? One solution would be to rewrite the offending MATLAB code but this is somewhat risky in terms of maintainability and compatibility.

A more elegant solution is to subclass the impoint class and substitute the setString behavior we want. Looking at the impoint code we find that impoint is a subclass of imroi. In the imroi property declarations we see a number of undocumented properties that are protected. We can access these properties in a subclass but not outside the class. One of these undocumented properties is h_group which is an hggroup that contains the handle graphic objects that make up the impoint on the screen. The label, when created, becomes part of this hggroup with its Tag property set to ‘label’. When performing the setString method the behavior we want to see is that if the text object exists we want to update its String property. If it does not exist we want it to perform its existing functionality:

classdef impointtextupdate < impoint
%IMPOINTTEXTUPDATE subclasses impoint to override the setString
%method of impoint so that it does not create a new text object
%each time it is called.   
 
  methods
    function obj = impointtextupdate(varargin)
      obj = obj@impoint(varargin{:});
    end %impointtextupdate
 
    function setString(obj,str)
      %override impoint setString
 
      %check to see if there is already a text label
      label = findobj(obj.h_group,'Type','text','Tag','label');
 
      if isempty(label)
        %do the default behavior
        setString@impoint(obj,str);
      else
        %update the existing tag
        set(label(1),'String',str);
      end %if
    end %setString
 
  end %methods
end %impointtextupdate

Substituting calls to impoint with the new impointupdatetext subclass now produces the desired effect as shown below:

After - expected behavior

After - expected behavior

Conclusions

This case illustrates a couple of points:

  • Much of the existing code in the MATLAB toolboxes is being updated to the new object oriented syntax. This presents many opportunities to easily and elegantly modify the default behavior without modifying provided toolbox code In the example above we retain all the desirable behavior of impoint while overriding the undesirable behavior.
  • Many of the properties and methods in the provided toolbox objects are hidden or protected and are undocumented. It takes some simple detective work to find these out through examining the code. MATLAB is very generous in providing much of the existing code openly. Open the functions and classes you use in the editor to really find out how they work. Over the years I’ve learned and adopted a lot of useful MATLAB programming patterns by examining the code in the various toolboxes (there are a few coding horrors as well!).

I hope to explore some other under-documented features of the IPT and other toolboxes in future posts.

Customizing print setup

Wednesday, November 25th, 2009

Last week, while consulting a client, I watched him use a Matlab application that processed data and presented the results in a figure window. I saw that he constantly needed to go to File/Print-Preview menu option to customize the figure’s print setup before being able to print. He would constantly click the “Fill Page” button, then go to the Color tab and set RGB rather than Black-and-White, and finally go to the Advanced tab to prevent printing UI controls. Only then would he actually print the figure using the menu (File/Print) or the toolbar Print button.

Print Preview window

Print Preview window

This is absurd, I thought to myself – there must be a better way. Unfortunately, Matlab only supports two documented ways to modify the print setup:

  • the print function enables setting print settings when actually printing the figure. It accepts a long list of optional parameters that specify a wide range of printing options. But if I want to allow users to print at their own time, using the default figure menu/toolbar, I need to separate the actions of (1) setting the print setup and (2) doing the actual printout action. Since print does both of these together, we can’t use it. Moreover, if we don’t call print, the setup remains at the default settings and the menu/toolbar printouts use this default setup.
  • the printopt.m file stores the user’s default print setup. This file can be modified (use the printopt function). However, it affects all Matlab printouts, and cannot be configured on a figure-by-figure basis.

Of course, lack of a documented method never stopped us before. Sure enough, after a short search I discovered the hidden potential of the undocumented/unsupported setprinttemplate function. This function, called internally by Matlab’s print-related functions, is responsible for setting the figure’s initial print setup. Once I had this key, unlocking the problem was easy. Here is the bottom line:

The figure’s default print setup is stored in the figure’s hidden ApplicationData property, accessible via the getappdata and setappdata functions or directly via get/set, as explained in a previous post. More importantly, the figure-specific setup is stored in another hidden property, PrintTemplate. Both of these setup data are stored in structure format, which is not available when a figure is first created, but only after printing or print-preview. Note that printtemplate.m contains detailed explanations about the meaning of some fields – to see them, simply display the file:

>> type printtemplate.m  % or: edit printtemplate.m

Unless we set PrintTemplate ourselves (or call print or printpreview to do this), printing the figure will use the default print setup. To set a non-standard setup, we just need to create the PrintTemplate structure with our non-default setup options. Matlab will then automatically use them when printing the figure. Here is a checklist for doing so:

  1. First, create a figure and get its default print setup data. Since this data is unavailable in newly-created figures, simply open the figure’s Print-Preview window without changing anything – this will create the missing print setup structure that we can retrieve:

    % Create a simple figure
    >> hFig = figure;  surf(peaks);
     
    % Open the print-preview window to create setup data
    >> printpreview(hFig);
     
    % Retrieve the original (default) print setup data
    >> oldSetup = get(hFig,'PrintTemplate')
    oldSetup = 
           VersionNumber: 2
                    Name: ''
               FrameName: ''
             DriverColor: 1
         AxesFreezeTicks: 0
               tickState: {}
        AxesFreezeLimits: 0
                limState: {}
                   Loose: 0
                    CMYK: 0
                  Append: 0
               Adobecset: 0
                 PrintUI: 1
                Renderer: 'auto'
          ResolutionMode: 'auto'
                     DPI: 0
                FileName: 'untitled'
             Destination: 'printer'
             PrintDriver: ''
               DebugMode: 0
              StyleSheet: 'default'
                FontName: ''
                FontSize: 0
            FontSizeType: 'screen'
               FontAngle: ''
              FontWeight: ''
               FontColor: ''
               LineWidth: 0
           LineWidthType: 'screen'
            LineMinWidth: 0
               LineStyle: ''
               LineColor: ''
            PrintActiveX: 0
               GrayScale: 0
                 BkColor: 'white'
                 FigSize: [14.8054083333333 11.10405625]
  2. Next, go to the File/Print-Preview menu option and modify the setup according to your specific needs, and retrieve the new (modified setup):
    >> newSetup = get(hFig,'PrintTemplate');
  3. Now compare the two structures and retrieve only the modified setup options. This can be done in several ways – I personally use the objdiff utility. In our case, we modified the DriverColor (B&W => color), FigSize (for “Fill page”), and PrintUI (for hiding UI controls) fields:
    >> objdiff(oldSetup,newSetup)
    ans = 
        DriverColor: {[0]  [1]}
            FigSize: {[14.8054083333333 11.10405625]  [2x1 double]}
            PrintUI: {[1]  [0]}
         StyleSheet: {'default'  'modified'}
           limState: {{}  ''}
          tickState: {{}  ''}
  4. Finally, use the undocumented printtemplate and setprinttemplate functions to prepare the default setup sub-structure, and override with the modified options that you have just discovered. Place this in the figure’s _OpeningFcn function (for GUIDE-generated figures) or in your figure’s initialization function (for non-GUIDE figures). For example, if we have a GUIDE-generated figure called “MyFig”, then place this code in the MyFig_OpeningFcn function in MyFig.m:
    function MyFig_OpeningFcn(hObject, eventdata, handles, varargin)
      ...
      % This was adapted from initprintexporttemplate.m
      pt = printtemplate;
      pt.StyleSheet = 'modified';
      pt.VersionNumber = 2;   % important (Note #1 below)
      pt.FigSize = [38.1, 21.0];
      pt.DriverColor = 1;
      pt.PrintUI = 0;
      % we must set the paper size *before* setprinttemplate
      set(hObject, 'PaperPositionMode','manual', ...
                   'PaperPosition',[0 0.5 29.5 20], ...
                   'PaperSize',[29.68 20.98], ...
                   'PaperType','A4');
      setprinttemplate(hObject, pt);
     
      % Choose default command line output for MyFig
      handles.output = hObject;
     
      % Update handles structure
      guidata(hObject, handles);

That’s all there is to it. So easy once we know how, isn’t it? The most annoying pain-in-the-so-and-so sometimes have simple solutions…

Note #1: it is very important to set pt.VersionNumber to 2, otherwise some modifications will not take effect.

Note #2: the internal implementation of printtemplate as well as the internal setup fields have changed between Matlab releases. These were often minor backward-compatible changes, but at least once this was a major change (VersionNumber 1=>2, I think around Matlab 7.2, but I’m not sure). Therefore, carefully test your code on the oldest release which is supposed to run it. Also, if you plan the code to run in future Matlab releases, you should note that the entire setup functionality might break without prior notice, since it is an internal unsupported implementation.

Undocumented XML functionality

Wednesday, November 18th, 2009

Matlab’s built-in XML-processing functions have several undocumented features that can be used by Java-savvy users. We should note that the entire XML-support functionality in Matlab is java-based. I understand that some Matlab users have a general aversion to Java, some even going as far as to disable it using the -nojvm startup option. But if you disable Java, Matlab’s XML functions will simply not work. Matlab’s own documentation points users to Sun’s official Java website for explanations of how to use the XML functionality (the link in the Matlab docpage is dead – the correct link should probably be https://jaxp-sources.dev.java.net/nonav/docs/api/, but Sun keeps changing its website so this link could also be dead soon…).

Using the full Java XML parsing (JAXP) functionality is admittedly quite intimidating for the uninitiated, but extremely powerful once you understand how all the pieces fit together. Over the years, several interesting utilities were submitted to the Matlab File Exchange that simplify this intimidating post-processing. See for example XML parsing tools, the extremely popular XML Toolbox and xml_io_tools, the recent XML data import and perhaps a dozen other utilities.

Each of Matlab’s main built-in XML-processing functions, xmlread, xmlwrite and xslt has an internal set of undocumented and unsupported functionalities, which builds on their internal Java implementation. As far as I could tell, these unsupported functionalities were supported at least as early as Matlab 7.2 (R2006a), and possibly even on earlier releases. For the benefit of the Java and/or JAXP -speakers out there (it will probably not help any others), I list Matlab’s internal description of these unsupported functionalities, annotated with API hyperlinks. These description (sans the links) can be seen by simply editing the m file, as in (the R2008a variant is described below):

edit xmlread

xmlread

function [parseResult,p] = xmlread(fileName,varargin)
  • FILENAME can also be an InputSource, File, or InputStream object
  • DOMNODE = XMLREAD(FILENAME,…,P,…) where P is a DocumentBuilder object
  • DOMNODE = XMLREAD(FILENAME,…,’-validating’,…) will create a validating parser if one was not provided.
  • DOMNODE = XMLREAD(FILENAME,…,ER,…) where ER is an EntityResolver will set the EntityResolver before parsing
  • DOMNODE = XMLREAD(FILENAME,…,EH,…) where EH is an ErrorHandler will set the ErrorHandler before parsing
  • [DOMNODE,P] = XMLREAD(FILENAME,…) will return a parser suitable for passing back to XMLREAD for future parses.

xmlwrite

function xmlwrite(FILENAME,DOMNODE);
function str = xmlwrite(DOMNODE);
function str = xmlwrite(SOURCE);

xslt

function [xResultURI,xProcessor] = xslt(SOURCE,STYLE,DEST,varargin)
  • SOURCE can also be a XSLTInputSource
  • STYLE can also be a StylesheetRoot or XSLTInputSource
  • DEST can also be an XSLTResultTarget. Note that RESULT may be empty in this case since it may not be possible to determine a URL. If STYLE is absent or empty, the function uses the stylesheet named in the xml-stylesheet processing instruction in the SOURCE XML file. (This does not always work)
  • There is also an entirely undocumented feature: passing a ‘-tostring’ input argument transforms the inputs into a displayed text segment, rather than into a displayed URI; the transformed text is returned in the xResultURI output argument.

Note: internal comments within the Matlab code seem to indicate that XSLT is SAXON-based, so interested users might use SAXON’s documentation for accessing additional XSLT-related features/capabilities.