Undocumented feature – Undocumented Matlab https://undocumentedmatlab.com Charting Matlab's unsupported hidden underbelly Fri, 20 Oct 2017 09:57:44 +0000 en-US hourly 1 https://wordpress.org/?v=4.4.1 Faster csvwrite/dlmwritehttps://undocumentedmatlab.com/blog/faster-csvwrite-dlmwrite https://undocumentedmatlab.com/blog/faster-csvwrite-dlmwrite#comments Tue, 03 Oct 2017 15:00:05 +0000 http://undocumentedmatlab.com/?p=7080
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Matlab’s builtin functions for exporting (saving) data to output files are quite sub-optimal (as in slowwwwww…). I wrote a few posts about this in the past (how to improve fwrite performance, and save performance). Today I extend the series by showing how we can improve the performance of delimited text output, for example comma-separated (CSV) or tab-separated (TSV/TXT) files.

The basic problem is that Matlab’s dlmwrite function, which can either be used directly, or via the csvwrite function which calls it internally, is extremely inefficient: It processes each input data value separately, in a non-vectorized loop. In the general (completely non-vectorized) case, each data value is separately converted into a string, and is separately sent to disk (using fprintf). In the specific case of real data values with simple delimiters and formatting, row values are vectorized, but in any case the rows are processed in a non-vectorized loop: A newline character is separately exported at the end of each row, using a separate fprintf call, and this has the effect of flushing the I/O to disk each and every row separately, which is of course disastrous for performance. The output file is indeed originally opened in buffered mode (as I explained in my fprintf performance post), but this only helps for outputs done within the row – the newline output at the end of each row forces an I/O flush regardless of how the file was opened. In general, when you read the short source-code of dlmwrite.m you’ll get the distinct feeling that it was written for correctness and maintainability, and some focus on performance (e.g., the vectorization edge-case). But much more could be done for performance it would seem.

This is where Alex Nazarovsky comes to the rescue.

Alex was so bothered by the slow performance of csvwrite and dlmwrite that he created a C++ (MEX) version that runs about enormously faster (30 times faster on my system). He explains the idea in his blog, and posted it as an open-source utility (mex-writematrix) on GitHub.

Usage of Alex’s utility is very easy:

mex_WriteMatrix(filename, dataMatrix, textFormat, delimiter, writeMode);

where the input arguments are:

  • filename – full path name for file to export
  • dataMatrix – matrix of numeric values to be exported
  • textFormat – format of output text (sprintf format), e.g. '%10.6f'
  • delimiter – delimiter, for example ',' or ';' or char(9) (=tab)
  • writeMode – 'w+' for rewriting file; 'a+' for appending (note the lowercase: uppercase will crash Matlab!)

Here is a sample run on my system, writing a simple CSV file containing 1K-by-1K data values (1M elements, ~12MB text files):

>> data = rand(1000, 1000);  % 1M data values, 8MB in memory, ~12MB on disk
>> tic, dlmwrite('temp1.csv', data, 'delimiter',',', 'precision','%10.10f'); toc
Elapsed time is 28.724937 seconds.
>> tic, mex_WriteMatrix('temp2.csv', data, '%10.10f', ',', 'w+'); toc   % 30 times faster!
Elapsed time is 0.957256 seconds.

Alex’s mex_WriteMatrix function is faster even in the edge case of simple formatting where dlmwrite uses vectorized mode (in that case, the file is exported in ~1.2 secs by dlmwrite and ~0.9 secs by mex_WriteMatrix, on my system).

Trapping Ctrl-C interrupts

Alex’s mex_WriteMatrix code includes another undocumented trick that could help anyone else who uses a long-running MEX function, namely the ability to stop the MEX execution using Ctrl-C. Using Ctrl-C is normally ignored in MEX code, but Wotao Yin showed how we can use the undocumented utIsInterruptPending() MEX function to monitor for user interrupts using Ctrl-C. For easy reference, here is a copy of Wotao Yin’s usage example (read his webpage for additional details):

/* A demo of Ctrl-C detection in mex-file by Wotao Yin. Jan 29, 2010. */
#include "mex.h"
#if defined (_WIN32)
    #include <windows.h>
#elif defined (__linux__)
    #include <unistd.h>
#ifdef __cplusplus 
    extern "C" bool utIsInterruptPending();
    extern bool utIsInterruptPending();
void mexFunction(int nlhs, mxArray *plhs[], int nrhs, const mxArray *prhs[]) {
    int count = 0;    
    while(1) {
        #if defined(_WIN32)
            Sleep(1000);        /* Sleep one second */
        #elif defined(__linux__)
            usleep(1000*1000);  /* Sleep one second */
        mexPrintf("Count = %d\n", count++);  /* print count and increase it by 1 */
        mexEvalString("drawnow;");           /* flush screen output */
        if (utIsInterruptPending()) {        /* check for a Ctrl-C event */
            mexPrintf("Ctrl-C Detected. END\n\n");
        if (count == 10) {
            mexPrintf("Count Reached 10. END\n\n");

Matlab performance webinars

Next week I will present live online webinars about numerous other ways to improve Matlab’s run-time performance:

These live webinars will be 3.5 hours long, starting at 10am EDT (7am PDT, 3pm UK, 4pm CET, 7:30pm IST, time in your local timezone), with a short break in the middle. The presentations content will be based on onsite training courses that I presented at multiple client locations (details). A recording of the webinars will be available for anyone who cannot join the live events.

Additional Matlab performance tips can be found under the Performance tag in this blog, as well as in my book “Accelerating MATLAB Performance“.

 Email me if you would like additional information on the webinars, or an onsite training course, or about my consulting.

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Runtime code instrumentationhttps://undocumentedmatlab.com/blog/runtime-code-instrumentation https://undocumentedmatlab.com/blog/runtime-code-instrumentation#comments Thu, 28 Sep 2017 13:36:17 +0000 http://undocumentedmatlab.com/?p=7063
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I regularly follow the MathWorks Pick-of-the-Week (POTW) blog. In a recent post, Jiro Doke highlighted Per Isakson’s tracer4m utility. Per is an accomplished Matlab programmer, who has a solid reputation in the Matlab user community for many years. His utility uses temporary conditional breakpoints to enable users to trace calls to their Matlab functions and class methods. This uses a little-known trick that I wish to highlight in this post.

tracer4m utility uses conditional breakpoints that evaluate but never become live

tracer4m utility uses conditional breakpoints that evaluate but never become live

Matlab breakpoints are documented and supported functionality, and yet their documented use is typically focused at interactive programming in the Matlab editor, or as interactive commands that are entered in the Matlab console using the set of db* functions: dbstop, dbclear, dbstatus, dbstack etc. However, nothing prevents us from using these db* functions directly within our code.

For example, the dbstack function can help us diagnose the calling tree for the current function, in order to do action A if one of the calling ancestors was FunctionX, or to do action B otherwise (for example, to avoid nested recursions).

Similarly, we could add a programmatic call to dbstop in order to stop at a certain code location downstream (for debugging), if a certain condition happens upstream.

Per extended this idea very cleverly in tracer4m: conditional breakpoints evaluate a string in run-time: if the result is true (non-zero) then the code run is stopped at that location, but if it’s false (or zero) then the code run continues normally. To instrument calls to specific functions, Per created a function tracer() that logs the function call (using dbstack) and always returns the value false. He then dynamically created a string that contains a call to this new function and used the dbstop function to create a conditional breakpoint based on this function, something similar to this:

dbstop('in', filename, 'at', location, 'if', 'tracer()');

We can use this same technique for other purposes. For example, if we want to do some action (not necessarily log – perhaps do something else) when a certain code point is reached. The benefit here is that we don’t need to modify the code at all – we’re adding ad-hoc code pieces using the conditional breakpoint mechanism without affecting the source code. This is particularly useful when we do not have access to the source code (such as when it’s compiled or write-protected). All you need to do is to ensure that the instrumentation function always returns false so that the breakpoint does not become live and for code execution to continue normally.

The tracer4m utility is quite sophisticated in the sense that it uses mlint and smart regexp to parse the code and know which functions/methods occur on which line numbers and have which type (more details). In this sense, Per used undocumented functionality. I’m certain that Jiro was not aware of the dependency on undocumented features when he posted about the utility, so please don’t take this to mean that Jiro or MathWorks officially support this or any other undocumented functionality. Undocumented aspects are often needed to achieve top functionality, and I’m happy that the POTW blog highlights utilities based on their importance and merit, even if they do happen to use some undocumented aspect.

tracer4m‘s code also contains references to the undocumented profiler option -history, but this is not in fact used by the code itself, only in comments. I use this feature in my profile_history utility, which displays the function call/timing history in an interactive GUI window. This utility complements tracer4m by providing a lot more information, but this can result in a huge amount of information for large and/or long-running programs. In addition, tracer4m has the benefit of only logging those functions/methods that the user finds useful, rather than all the function call, which enables easier debugging when the relevant code area is known. In short, I wish I had known about tracer4m when I created profile_history. Now that I know about it, maybe I’ll incorporate some of its ideas into profile_history in order to make it more useful. Perhaps another moral of this is that we should actively monitor the POTW blog, because true gems are quite often highlighted there.

Function call timeline profiling
Function call timeline profiling

For anyone who missed the announcement in my previous post, I’m hosting a series of live webinars on advanced Matlab topics in the upcoming 2 weeks – I’ll be happy if you would join.

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Sending HTML emails from Matlabhttps://undocumentedmatlab.com/blog/sending-html-emails-from-matlab https://undocumentedmatlab.com/blog/sending-html-emails-from-matlab#respond Wed, 02 Aug 2017 21:19:42 +0000 http://undocumentedmatlab.com/?p=6986
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A few months ago I wrote about various tricks for sending email/text messages from Matlab. Unfortunately, Matlab only sends text emails by default and provides no documented way to send HTML-formatted emails. Text-only emails are naturally very bland and all mail clients in the past 2 decades support HTML-formatted emails. Today I will show how we can send such HTML emails from Matlab.

A quick recap: Matlab’s sendmail function uses Java (specifically, the standard javax.mail package) to prepare and send emails. The Java classes are extremely powerful and so there is no wonder that Mathworks chose to use them rather than reinventing the wheel. However, Matlab’s sendmail function only uses part of the functionality exposed by these classes (admittedly, the most important parts that deal with the basic mail-sending mechanism), and does not expose external hooks or input args that would enable the user to take full advantage of the more advanced features, HTML formatting included.

Only two small changes are needed in sendmail.m to support HTML formatting:

  1. HTML formatting required calling the message-object’s setContent() method, rather than setText().
  2. We need to specify 'text/html' as part of the message’s encoding

To implement these features, change the following (lines #119-130 in the original sendmail.m file of R2017a, changed lines highlighted):

% Construct the body of the message and attachments.
body = formatText(theMessage);
if numel(attachments) == 0    if ~isempty(charset)        msg.setText(body, charset);
    % Add body text.
    messageBodyPart = MimeBodyPart;
    if ~isempty(charset)        messageBodyPart.setText(body, charset);

to this (changed lines highlighted):

% Construct the body of the message and attachments.
body = formatText(theMessage);
isHtml = ~isempty(body) && body(1) == '<';  % msg starting with '<' indicates HTMLif isHtml    if isempty(charset)        charset = 'text/html; charset=utf-8';    else        charset = ['text/html; charset=' charset];    endendif numel(attachments) == 0  && ~isHtml    if isHtml        msg.setContent(body, charset);    elseif ~isempty(charset)        msg.setText(body, charset);
        % Add body text.
        messageBodyPart = MimeBodyPart;
        if isHtml            messageBodyPart.setContent(body, charset);        elseif ~isempty(charset)            messageBodyPart.setText(body, charset);

In addition, I also found it useful to remove the hard-coded 75-character line-wrapping in text messages. This can be done by changing the following (line #291 in the original sendmail.m file of R2017a):

maxLineLength = 75;

to this:

maxLineLength = inf;  % or some other large numeric value


It’s useful to note two alternatives for making these fixes:

  • Making the changes directly in %matlabroot%/toolbox/matlab/iofun/sendmail.m. You will need administrator rights to edit this file. You will also need to redo the fix whenever you install Matlab, either installation on a different machine, or installing a new Matlab release. In general, I discourage changing Matlab’s internal files because it is simply not very maintainable.
  • Copying %matlabroot%/toolbox/matlab/iofun/sendmail.m into a dedicated wrapper function (e.g., sendEmail.m) that has a similar function signature and exists on the Matlab path. This has the benefit of working on multiple Matlab releases, and being copied along with the rest of our m-files when we install our Matlab program on a different computer. The downside is that our wrapper function will be stuck with the version of sendmail.m that we copied into it, and we’d lose any possible improvements that Mathworks may implement in future Matlab releases.

The basic idea for the second alternative, the sendEmail.m wrapper, is something like this (the top highlighted lines are the additions made to the original sendmail.m, with everything placed in sendEmail.m on the Matlab path):

function sendEmail(to,subject,theMessage,attachments)%SENDEMAIL Send e-mail wrapper (with HTML formatting)   sendmail(to,subject,theMessage,attachments); 
% The rest of this file is copied from %matlabroot%/toolbox/matlab/iofun/sendmail.m (with the modifications mentioned above):
function sendmail(to,subject,theMessage,attachments)
%SENDMAIL Send e-mail.
%   SENDMAIL(TO,SUBJECT,MESSAGE,ATTACHMENTS) sends an e-mail.  TO is either a
%   character vector specifying a single address, or a cell array of character vector

We would then call the wrapper function as follows:

sendEmail('abc@gmail.com', 'email subject', 'regular text message');     % will send a regular text message
sendEmail('abc@gmail.com', 'email subject', '<b><font color="blue">HTML-formatted</font> <i>message');  % HTML-formatted message

In this case, the code automatically infers HTML formatting based on whether the first character in the message body is a ‘<‘ character. Instead, we could just as easily have passed an additional input argument (isHtml) to our sendEmail wrapper function.

Hopefully, in some future Matlab release Mathworks will be kind enough to enable sending 21st-century HTML-formatted emails without needing such hacks. Until then, note that sendmail.m relies on standard non-GUI Java networking classes, which are expected to be supported far into the future, well after Java-based GUI may cease to be supported in Matlab. For this reason I believe that while it seems a bit tricky, the changes that I outlined in today’s post actually have a low risk of breaking in a future Matlab release.

Do you have some other advanced email feature that you use in your Matlab program by some crafty customization to sendmail? If so, please share it in a comment below.

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User-defined tab completions – take 2https://undocumentedmatlab.com/blog/user-defined-tab-completions-take-2 https://undocumentedmatlab.com/blog/user-defined-tab-completions-take-2#comments Wed, 12 Jul 2017 13:00:30 +0000 http://undocumentedmatlab.com/?p=6961
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Back in 2010, I posted about Matlab’s undocumented mechanism for setting Matlab desktop tab-completions. That mechanism used a couple of internal files (TC.xml and TC.xsd) to describe the various possible options that are auto-completed (or displayed in a small tooltip window) when the user clicks the <Tab> key on partially-entered function input parameters.

Using TabComplete for user-defined functions

Using TabComplete for user-defined functions

Unfortunately, this mechanism apparently broke in R2016a and was replaced with a new mechanism, as explained below.

The new mechanism relies on a file called functionSignatures.json which exists in every single folder that contains Matlab files that have functions whose input parameters ought to be tab-completable.

The new mechanism offers far greater versatility and flexability in defining the input types and inter-relationsships compared to the old TC.*-based mechanism. Another important benefit is that we can now add custom user-defined functionSignatures.json files to our user folders, next to our m-files, without having to modify any Matlab system file.

Note that you may need to restart Matlab the first time that you create a functionSignatures.json file. But once it’s created, you can modify it within a Matlab session and the changes take effect immediately.

Note: Credit for first posting about this new mechanism goes to Nicholas Mati. I’ve known about this new mechanism for over a year, but I never found the time to write about it until now, so Nicholas gets credit for breaking the scoop. The discussion below uses and expands Nicholas’ original post.


The functionSignatures.json file has the general form:


A number of keys are supported including “platform“, “setsAns“, “inputs“, and “outputs“, although inputs and outputs are by far the most common (and presumably only inputs are relevant for tab-completion). These keys take an array of (or a single) object value(s). The objects typically take one of the following forms:

{"name":"variable_name", "kind":"kind_option", "type":"string_or_array_of_type"}
{"name":"varargin", "kind":"optional", "multiplicity":"append"}

The value for “kind” can be “required”, “optional”, “positional”, “flag”, “namevalue” or “platform” (and perhaps a few other lesser-used kinds):

  • required” means that the specified input is mandatory
  • optional” means that it can be added or omitted
  • positional” means that it’s an optional input but if it is specified then it must appear at the specified position relative to the previous (earlier) inputs
  • flag” means that it’s an optional input flag, from a predefined list of one or more single-token strings. For example, in regexp(s1,s2,'once') the last input arg ('once') is such a flag.
  • namevalue” means that it follows Matlab’s standard practice of using P-V pairs (parameter name followed by its value). For example, func('propName',propValue)
  • platform” indicates that this input is only available on the specified platform(s)

These “kind”s are all explained below.

The value for “type” can be a string such as “char” or “numeric” or “filepath”, or a more complicated JSON array (see below).

In addition to “name”, “kind” and “type”, we can also define a “default” value (e.g. "default":"false") and a “display” string. While these are [currently] not used by Desktop tab-completion, they might be used by other components such as the JIT compiler or the Editor, if not today then perhaps in a future release.

Note that while pure JSON format does not accept comments, Matlab’s functionSignatures.json does accept C++-style comments, as discovered by Heiko in a comment below. To add a comment, simply add // comment text at the end of any line, or /* comment text */ anywhere within a line.

Usage examples

Multiple examples of functionSignatures.json files can be found in subfolders of %matlabroot%/toolbox/matlab. For example, here’s the tab-completion definition for the visdiff function, which displays a visual comparison between two files, and resides in %matlabroot%/toolbox/shared/comparisons/functionSignatures.json:

        {"name":"filename1", "kind":"required",   "type":"filepath"},
        {"name":"filename2", "kind":"required",   "type":"filepath"},
        {"name":"type",      "kind":"positional", "type":"choices={'text', 'binary'}"}

As can be seen in this example, the first and second inputs are expected to be a filename, whereas the third input is one of the two predefined strings ‘text’ or ‘binary’. This third input has “kind”:”positional”, meaning that it is optional, but if it is provided then it must be in the 3rd position and cannot appear sooner. Moreover, if the user specifies any input argument to the “right” of a positional input, then the positional argument becomes required, not optional.

Whereas a “positional” parameter has a specific position in the args list (#3 in the case of visdiff above), an “optional” parameter may appear anywhere in the list of inputs.

Here’s a more complex example, for the built-in regexprep function (in %matlabroot%/toolbox/matlab/strfun/functionSignatures.json). This example shows how to limit the input to certain data types and how to specify optional input flags with pre-defined choices:

		{"name":"str",               "kind":"required",  "type":[["char"], ["cell"], ["string"]]},
		{"name":"expression",        "kind":"required",  "type":[["char"], ["cell"], ["string"]]},
		{"name":"replace",           "kind":"required",  "type":[["char"], ["cell"], ["string"]]},
		{"name":"optMatch",          "kind":"flag",      "display":"", "type":[["char", "choices={'all','once'}"], ["numeric", "scalar"]],   "default":"'all'"},
		{"name":"optWarnings",       "kind":"flag",      "display":"", "type":["char", "choices={'nowarnings','warnings'}"],                 "default":"'nowarnings'"},
		{"name":"optCase",           "kind":"flag",      "display":"", "type":["char", "choices={'matchcase','ignorecase','preservecase'}"], "default":"'matchcase'"},
		{"name":"optEmptyMatch",     "kind":"flag",      "display":"", "type":["char", "choices={'noemptymatch','emptymatch'}"],             "default":"'noemptymatch'"},
		{"name":"optDotAll",         "kind":"flag",      "display":"", "type":["char", "choices={'dotall','dotexceptnewline'}"],             "default":"'dotall'"},
		{"name":"optStringAnchors",  "kind":"flag",      "display":"", "type":["char", "choices={'stringanchors','lineanchors'}"],           "default":"'stringanchors'"},
		{"name":"optSpacing",        "kind":"flag",      "display":"", "type":["char", "choices={'literalspacing','freespacing'}"],          "default":"'literalspacing'"}
		{"name":"newStr", "type":[["char"], ["cell"], ["string"]]}

Here’s an even more complex example, this time for the codegen function (in %matlabroot%/toolbox/coder/matlabcoder/functionSignatures.json, part of the Matlab Coder toolbox). This example shows how to limit the filenames to certain extensions and how to specify name-value input pairs:

		{"name":"compile_only",  "kind":"flag",       "type":"choices={'-c'}"},
		{"name":"config_flag",   "kind":"flag",       "type":"choices={'-config:mex','-config:lib','-config:dll','-config:exe','-config:hdl'}"},
		{"name":"debug",         "kind":"flag",       "type":"choices={'-g'}"},
		{"name":"report",        "kind":"flag",       "type":"choices={'-report'}"},
		{"name":"launchreport",  "kind":"flag",       "type":"choices={'-launchreport'}"},
		{"name":"file",          "kind":"flag",       "type":"filepath=*.m,*.mlx,*.c,*.cpp,*.h,*.o,*.obj,*.a,*.so,*.lib,*.tmf", "multiplicity":"append"},
		{"name":"-d",            "kind":"namevalue",  "type":"folderpath"},
		{"name":"-I",            "kind":"namevalue",  "type":"folderpath"},
		{"name":"-globals",      "kind":"namevalue"},
		{"name":"-o",            "kind":"namevalue",  "type":[["char"], ["filepath"]]},
		{"name":"-O",            "kind":"namevalue",  "type":"choices={'enable:inline','disable:inline','enable:blas','disable:blas','enable:openmp','disable:openmp'}"},
		{"name":"-args",         "kind":"namevalue",  "type":[["identifier=variable"], ["char"]]},
		{"name":"-config",       "kind":"namevalue",  "type":[["identifier=variable"], ["char"]]},
		{"name":"verbose",       "kind":"flag",       "type":"choices={'-v'}"},
		{"name":"singleC",       "kind":"flag",       "type":"choices={'-singleC'}"},
		{"name":"-test",         "kind":"namevalue",  "type":"identifier=function"}

Argument types

As noted above, we use "type":... to specify the expected data type of each parameter. This can be a simple string such as “char”, “cellstr”, “numeric”, “table”, “categorical”, “filepath”, “folderpath”, “matlabpath”, class name, or a more complicated JSON array. For example:

  • "type":["numeric","scalar"]
  • "type":["numeric","numel=3",">=4"]
  • "type":[["char"], ["cellstr"], ["numeric"], ["logical","vector"]]
  • "type":[["char", "choices={'-ascii'}"]]
  • "type":[["filepath"], ["matlabpath=*.m,*.mlx"], ["char"]]
  • "type":"identifier=variable,function,localfunction,package,classdef"
  • "type":"matlab.graphics.axis.Axes"
  • "type":"choices={'yes','no','maybe'}"

We can even specify on-the-fly Matlab computation that returns a cell-array of values, for example a list of available fonts via "type":"choices=listfonts". A more complex example is the definition of the rmfield function, where the possible input choices for the second input arg (highlighted) depend on the struct that is provided in the first input arg (by running the fieldnames function on it):

		{"name":"s",     "kind":"required", "type":"struct"},
		{"name":"field", "kind":"required", "type":"choices=fieldnames(s)"}	],
		{"name":"s", "type":"struct"}

Alternative inputs

Multiple alternative inputs can be specified in the functionSignatures.json file. The easiest way to do so is to simply create multiple different definitions for the same function, one beneath the other. Matlab’s tab-completion parser is smart enough to combine those definitions and proceed with the most appropriate one based on the user-entered inputs.

For example, in the same Coder file above we find 6 alternative definitions. If (for example) we start typing coder('-ecoder', and click <Tab>, Matlab would automatically auto-complete the second input to “false”, and then another <Tab> click would set the third input to the required ‘-new’ parameter (see highlighted lines below):

		{"name":"projectname", "kind":"required", "type":"filepath=*.prj"}
		{"name":"-open", "kind":"namevalue", "type":"filepath=*.prj"}
		{"name":"-build", "kind":"namevalue", "type":"filepath=*.prj"}
		{"name":"-new", "kind":"namevalue", "type":[["filepath=*.prj"], ["char"]]}
		{"name":"ecoderFlag",  "kind":"required", "type":"choices={'-ecoder'}"},		{"name":"ecoderValue", "kind":"required", "type":[["logical"], ["choices={'false'}"]]},		{"name":"newFlag",     "kind":"required", "type":"choices={'-new'}"},		{"name":"newvalue",    "kind":"required", "type":[["filepath=*.prj"], ["char"]]}	]
		{"name":"tocodeFlag",  "kind":"required", "type":"choices={'-tocode'}"},
		{"name":"tocodevalue", "kind":"required", "type":"filepath=*.prj"},
					{"name":"scriptFlag", "kind":"required", "type":"choices={'-script'}"},
					{"name":"scriptname", "kind":"required", "type":[["filepath=*.m"], ["char"]]}

This example also shows, in the last definition for the coder function, another mechanism for specifying alternative inputs, using “mutuallyExclusiveGroup” (aka “MEGs”). A MEG is defined using an array of options, enclosed in square brackets ([]). Each of the MEG options is exclusive to each of the others, meaning that we can only work with one of them and not the others. This is equivalent to duplicating the definition as we saw above, and saves us some copy-paste (in some cases a lot of copy-pastes, especially with multiple and/or nested MEGs). However, MEGs have a major drawback of reduced readability. I believe that in most cases we only have a single MEG and few input args, and in such cases it makes more sense to use repeated function defs rather than a MEG. The Matlab signature files contain numerous usage examples for either of these two mechanisms.

Platform dependencies

If a specific function (or a specific signature variant) depends on the running platform, this can be specified via the “platform” directive. For example, the winopen function only works on Windows, but not on Linux/Mac. Its corresponding signature definition is:

	"platform":"win32,win64",	"inputs":
		{"name":"filename", "kind":"required", "type":"filepath"},
		{"name":"varargin", "kind":"optional", "multiplicity":"append"}

Platform dependence could also be specified at the parameter level, not just the entire function level. For example, in the xlsread function (defined in %matlabroot%/toolbox/matlab/iofun/functionSignatures.json), we see that the usage variant xlsread(filename,-1) is only available on Windows (note that the numeric value is defined as "<=-1", not necessarily -1), and so is the “functionHandle” input (which is called processFcn in the documentation – for some reason that escapes me the names of many input args do not match in the documentation and functionSignature):

		{"name":"filename", "kind":"required", "type":"filepath=*.xls,*.xlsx,*.xlsb,*.csv"},
				{"name":"openExcel", "kind":"required", "display":"", "type":["numeric", "<=-1"], "platform":"win64,win32"},				{"name":"xlRange",   "kind":"required", "type":["char", "@(x) isempty(x) || ~isempty(strfind(x, ':'))"], "default":"''"},
					{"name":"sheet",          "kind":"positional", "type":[["char", "choices=matlab.internal.language.introspective.tabcompletion.xlsread_vsheet(filename)"], ["numeric", ">=1"]], "default":"1"},
					{"name":"xlRange",        "kind":"positional", "type":"char", "default":"''"},
					{"name":"basic",          "kind":"positional", "display":"", "type":["char", "choices={'basic',''}"]},
					{"name":"functionHandle", "kind":"positional", "type":"function_handle", "platform":"win64,win32"}				]

Parsing errors

The new mechanism is not very user-friendly when you get something wrong. In the best case, it issues a cryptic error message (see below), and in the worst case it simply ignores the changes and the user has no idea why the new custom tab-completion is not working as intended.

The most likely causes of such problems are:

  • The most common problem is that you placed the functionSignatures.json file in a different folder than the Matlab function. For example, if the myFunction() function is defined in myFunction.m, then the tab-completion of this function MUST be located in a functionSignatures.json file that resides in the same folder, not anywhere else on the Matlab path. In other words, the Matlab path is NOT relevant for tab-completion.
  • Your functionSignatures.json file does not follow the [extremely strict] syntax rules above, to the letter. For example, forgetting the top or final curly braces, forgetting a comma or adding an extra one, or not closing all brackets/braces properly.
  • You mistyped one or more of the input parameters, types or options.

In case of a parsing error, you’d see a red error message on the Matlab console the next time that you try to use tab-completion:

Error parsing JSON data; Boost reports "(189): expected ',' or ']'".

Unfortunately the error message only tells us the problematic line location within the functionSignatures.json file, but not the file’s location, so if we haven’t recently edited this file we’d need to find it in the relevant folder. For example:

edit(fullfile(fileparts(which('myFunction')), 'functionSignatures.json')

Moreover, when a JSON syntax error (such as the one above) occurs, the entire file is not parsed, not just the definition that caused the error.

Another limitation of tab-completion is that it does not work while the main Matlab thread is working (e.g., during a uiwait or waitfor). This may be somewhat misleading since most editor/debugging actions do work.

Arguably, this new tab-completion mechanism could be made more programmer-friendly. Perhaps this will improve in a future Matlab release.

For a related mechanism, see my article on tab-completion for class properties and methods from 2014, which is apparently still relevant and functional.

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Matlab compilation quirks – take 2https://undocumentedmatlab.com/blog/matlab-compilation-quirks-take-2 https://undocumentedmatlab.com/blog/matlab-compilation-quirks-take-2#respond Wed, 31 May 2017 18:00:42 +0000 http://undocumentedmatlab.com/?p=6919
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Once again I would like to welcome guest blogger Hanan Kavitz of Applied Materials. Hanan posted a couple of guest posts here over the past few years, including a post last year about quirks with Matlab-compiled DLLs. Today Hanan will follow up on that post by discussing several additional quirks that they have encountered with Matlab compilations/deployment.

Don’t fix it, if it ain’t broke…

In Applied Materials Israel (PDC) we use Matlab code for both algorithm development and deployment (production). As part of the dev-ops build system, which builds our product software versions, we build Matlab artifacts (binaries) from the Matlab source code.

A typical software version has several hundreds Matlab artifacts that are automatically rebuilt on a daily basis, and we have many such versions – totaling many thousands of compilations each day.

This process takes a long time, so we were looking for a way to make it more efficient.

The idea that we chose to implement sounds simple – take a single binary module in any software version (Ex. foo.exe – Matlab-compiled exe) and check it: if the source code for this module has not changed since the last compilation then simply don’t compile it, just copy it from previous software version repository. Since most of our code doesn’t change daily (some of it hasn’t changed in years), we can skip the compilation time of most binaries and just copy them from some repository of previously compiled binaries.

In a broader look, avoiding lengthy compilations cycles by not compiling unchanged code is a common programming practice, implemented by all modern compilers. For example, the ‘make’ utility uses a ‘makefile’ to check the time stamps of all dependencies of every object file in order to decide which object requires recompilation. In reality, this is not always the best solution as time stamps may be incorrect, but it works well in the vast majority of cases.

Coming back to Matlab, now comes the hard part – how could our build system know that nothing has changed in module X and that something has changed in module Y? How does it even know which source files it needs to ensure didn’t change?

The credit for the idea goes to my manager, Lior Cohen, as follows: You can actually check the dependency of a given binary after compilation. The basis of the solution is that a Matlab executable is in fact a compressed (zip) file. The idea is then to:

  1. Compile the binary once
  2. Unzip the binary and “see” all your dependencies (source files are encrypted and resources are not, but we only need the list of file names – not their content).
  3. Now build a list of all your dependency files and compute the CRC value of each from the source control. Save it for the next time you are required to compile this module.
  4. In the next compilation cycle, find this dependency list, review it, dependency source file at a time and make sure CRC of the dependency hasn’t changed since last time.
  5. If no dependency CRC has changed, then copy the binary from the repository of previous software version, without compiling.
  6. Otherwise, recompile the binary and rebuild the CRC list of all dependencies again, in preparation for the next compilation cycle.

That’s it! That simple? Well… not really – the reality is a bit more complex since there are many other dependencies that need to be checked. Some of them are:

  1. Did the requested Matlab version of the binary change since the last compilation?
  2. Did the compilation instructions themselves (we have a sort of ‘makefile’) change?

Basically, I implemented a policy that if anything changed, or if the dependency check itself failed, then we don’t take any chances and just compile this binary. Keeping in mind that this dependencies check and file copying is much faster than a Matlab compilation, we save a lot of actual compilation time using this method.

Bottom line: Given a software version containing hundreds of compilation instructions to execute and assuming not much has changed in the version (which is often the case), we skip over 90% of compilations altogether and only rebuild what really changed. The result is a version build that takes about half an hour, instead of many hours. Moreover, since the compilation process is working significantly less, we get fewer failures, fewer stuck or crashed mcc processes, and [not less importantly] less maintenance required by me.

Note that in our implementation we rely on the undocumented fact that Matlab binaries are in fact compressed zip archives. If and when a future Matlab release will change the implementation such that the binaries will no longer be zip archives, another way will need to be devised in order to ensure the consistency of the target executable with its dependent source files.

Don’t kill it, if it ain’t bad…

I want to share a very weird issue I investigated over a year ago when using Matlab compiled exe. It started with a user showed me a Matlab compiled exe that didn’t run – I’m not talking about a regular Matlab exception: the process was crashing with an MS Windows popup window popping, stating something very obscure.

It was a very weird behavior that I couldn’t explain – the compiler seemed to work well but the compiled executable process kept crashing. Compiling completely different code showed the same behavior.

This issue has to do with the system compiler configuration that is being used. As you might know, when installing the Matlab compiler, before the first compilation is ever made, the user has to state the C compiler that the Matlab compiler should use in its compilation process. This is done by command ‘mbuild –setup’. This command asks the users to choose the C compiler and saves the configuration (batch file back then, xml in the newer versions of Matlab) in the user’s prefdir folder. At the time we were using Microsoft Visual C++ compiler 9.0 SP1.

The breakthrough in the investigation came when I ran mcc command with –verbose flag, which outputs much more compilation info than I would typically ever want… I discovered that although the target executable file had been created, a post compilation step failed to execute, while issuing a very cryptic error message:

mt.exe : general error c101008d: Failed to write the updated manifest to the resource of file “…”. Access is denied.

cryptic compilation error (click to zoom)

cryptic compilation error (click to zoom)

The failure was in one of the ‘post link’ commands in the configuration batch file – something obscure such as this:


This line of code takes an XML manifest file and inserts it into the generated binary file (additional details).

If you open a valid R2010a (and probably other old versions as well) Matlab-generated exe in a text editor you can actually see a small XML code embedded in it, while in a non-functioning exe I could not see this XML code.

So why would this command fail?

It turned out, as funny as it sounds, to be an antivirus issue – our IT department updated its antivirus policies and this ‘post link’ command suddenly became an illegal operation. Once our IT eased the policy, this command worked well again and the compiled executables stopped crashing, to our great joy.

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GUI formatting using HTMLhttps://undocumentedmatlab.com/blog/gui-formatting-using-html https://undocumentedmatlab.com/blog/gui-formatting-using-html#comments Wed, 05 Apr 2017 20:26:44 +0000 http://undocumentedmatlab.com/?p=6877
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As I’ve mentioned several times in the past, HTML can be used for simple formatting of GUI controls, including font colors/sizes/faces/angles. With a bit of thought, HTML (and some CSS) can also be used for non-trivial formatting, that would otherwise require the use of Java, such as text alignment, background color, and using a combination of text and icons in the GUI control’s contents.


For example, a question that I am often asked (latest example) is whether it is possible to left/center/right align the label within a Matlab button, listbox or table. While Matlab does not (yet) have properties that control alignment in uicontrols, we can indeed use HTML for this. There’s a catch though: if we simply tried to use <div align="left">…, it will not work. No error will be generated but we will not see any visible left-alignment. The reason is that internally, the text is contained within a snugly-fitting box. Aligning anything within a tight-fitting box obviously has no effect.

To solve the problem, we need to tell Matlab (or rather, the HTML interpreter used by the underlying Java control) to widen this internal box. One way to do this is to specify the width of the div tag, which can be enormous in order to span the entire available apace (<div width="999px" align="left">…). Another method is to simulate a simple HTML table that contains a single cell that holds the text, and then tell HTML the table cell’s width:

hButton.String   = '<html><tr><td width=9999 align=left>Left-aligned';  % left-align within a button
hTable.Data{2,1} = '<html><tr><td width=9999 align=right>And right';   % right-align within a specific uitable cell

centered (default) button label   right-aligned button label

Centered (default) and right-aligned button labels

Non-default alignment of uitable cells

Non-default alignment of uitable cells

I discussed the specific aspect of uicontrol content alignment in another post last year.

Background color

The same problem (and solution) applies to background colors: if we don’t enlarge the snugly-fitting internal bounding-box, any HTML bgcolor that we specify would only be shown under the text (i.e., within the internal box’s confines). In order to display bgcolor across the entire control/cell width, we need to enlarge the internal box’s width (the align and bgcolor tags can of course be used together):

hButton.String   = '<html><tr><td width=9999 bgcolor=#ffff00>Yellow';  % bgcolor within a button
hTable.Data{2,1} = '<html><tr><td width=9999 bgcolor=#ffff00>Yellow';  % bgcolor within a specific uitable cell


We can also use simple CSS, which provides more formatting customizability than plain HTML:

hTable.Data{2,1} = '<html><tr><td width=9999 style="background-color:yellow">Yellow';

HTML/CSS formatting is a poor-man’s hack. It is very crude compared to the numerous customization options available via Java. However, it does provide a reasonable solution for many use-cases, without requiring any Java. I discussed the two approaches for uitable cell formatting in this post.

[Non-]support in uifigures

Important note: HTML formatting is NOT [yet] supported by the new web-based uifigures. While uifigures can indeed be hacked with HTML/CSS content (details), this is not an easy task. Since it should be trivially easy for MathWorks to enable HTML content in the new web-based uifigures, I implore anyone who uses HTML in their Matlab GUI to let MathWorks know about it so that they could prioritize this R&D effort into an upcoming Matlab release. You can send an email to George.Caia at mathworks.com, who apparently handles such aspects in MathWorks’ R&D efforts to transition from Java-based GUIs to web-based ones. In my previous post I spotlit MathWorks user-feedback surveys about users’ use of Java GUI aspects, aimed in order to migrate as many of the use-cases as possible onto the new web-based framework. HTML/CSS support is a natural by-product of the fact that Matlab’s non-web-based GUI is based on Java Swing components (that inherently support HTML/CSS). But unfortunately the MathWorks surveys are specific to the javacomponent function and the figure’s JavaFrame property. In other words, many users might be using undocumented Java aspects by simply using HTML content in their GUI, without ever realizing it or using javacomponent. So I think that in this case a simple email to George.Caia at mathworks.com to let him know how you’re using HTML would be more useful. Maybe one day MathWorks will be kind enough to post a similar survey specific to HTML support, or maybe one day they’s just add the missing HTML support, if only to be done with my endless nagging. :-)

p.s. – I am well aware that we can align and bgcolor buttons in AppDesigner. But we can’t do this with individual table/listbox cells, and in general we can’t use HTML within uifigures without extensive hacks. I merely used the simple examples of button and uitable cell formatting in today’s post to illustrate the issue. So please don’t get hung up on the specifics, but rather on the broader issue of HTML support in uifigures.

And in the meantime, for as long as non-web-based GUI is still supported in Matlab, keep on enjoying the benefits that HTML/CSS provides.

Automated bug-fix emails

In an unrelated matter, I wish to express my Kudos to the nameless MathWorkers behind the scenes who, bit by bit, improve Matlab and the user experience: Over the years I’ve posted a few times my frustrations with the opaqueness of MathWorks’ bug-reporting mechanism. One of my complaints was that users who file bugs are not notified when a fix or workaround becomes available. That at least seems to have been fixed now. I just received a seemingly-automated email notifying me that one of the bugs that I reported a few years ago has been fixed. This is certainly a good step in the right direction, so thank you!

Happy Passover/Easter to all!

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Additional license datahttps://undocumentedmatlab.com/blog/additional-license-data https://undocumentedmatlab.com/blog/additional-license-data#comments Wed, 15 Feb 2017 18:01:55 +0000 http://undocumentedmatlab.com/?p=6852
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Matlab’s license function returns the primary license number/ID used by Matlab, but no information about the various toolboxes that may be installed. The ver function returns a bit more information, listing the version number and installation date of installed toolboxes (even user toolboxes, such as my IB-Matlab toolbox). However, no additional useful information is provided beyond that:

>> license
ans =
123456   % actual number redacted
>> ver
MATLAB Version: (R2016b)
MATLAB License Number: 123456
Operating System: Microsoft Windows 7 Professional  Version 6.1 (Build 7601: Service Pack 1)
Java Version: Java 1.7.0_60-b19 with Oracle Corporation Java HotSpot(TM) 64-Bit Server VM mixed mode
MATLAB                                                Version 9.1         (R2016b)           
Curve Fitting Toolbox                                 Version 3.5.4       (R2016b)           
Database Toolbox                                      Version 7.0         (R2016b)           
Datafeed Toolbox                                      Version 5.4         (R2016b)           
Financial Instruments Toolbox                         Version 2.4         (R2016b)           
Financial Toolbox                                     Version 5.8         (R2016b)           
GUI Layout Toolbox                                    Version 2.2.1       (R2015b)           
Global Optimization Toolbox                           Version 3.4.1       (R2016b)           
IB-Matlab - Matlab connector to InteractiveBrokers    Version 1.89        Expires: 1-Apr-2018
Image Processing Toolbox                              Version 9.5         (R2016b)           
MATLAB Coder                                          Version 3.2         (R2016b)           
MATLAB Report Generator                               Version 5.1         (R2016b)           
Optimization Toolbox                                  Version 7.5         (R2016b)           
Parallel Computing Toolbox                            Version 6.9         (R2016b)           
Statistical Graphics Toolbox                          Version 1.2                            
Statistics and Machine Learning Toolbox               Version 11.0        (R2016b)           
>> v = ver
v = 
  1×16 struct array with fields:
>> v(1)
ans = 
  struct with fields:
       Name: 'Curve Fitting Toolbox'
    Version: '3.5.4'
    Release: '(R2016b)'
       Date: '25-Aug-2016'
>> v(8)
ans = 
  struct with fields:
       Name: 'IB-Matlab - Matlab connector to InteractiveBrokers'
    Version: '1.89'
    Release: 'Expires: 1-Apr-2018'
       Date: '02-Feb-2017'

It is sometimes useful to know which license number “owns” which product/toolbox, and the expiration date is associated with each of them. Unfortunately, there is no documented way to retrieve this information in Matlab – the only documented way is to go to your account section on the MathWorks website and check there.

Luckily, there is a simpler way that can be used to retrieve additional information, from right inside Matlab, using matlab.internal.licensing.getFeatureInfo:

>> all_data = matlab.internal.licensing.getFeatureInfo
all_data = 
  23×1 struct array with fields:
>> all_data(20)
ans = 
  struct with fields:
           feature: 'optimization_toolbox'
           expdate: '31-mar-2018'
              keys: 0
    license_number: '123456'
    entitlement_id: '1409891'
>> all_data(21)
ans = 
  struct with fields:
           feature: 'optimization_toolbox'
           expdate: '07-mar-2017'
              keys: 0
    license_number: 'DEMO'
    entitlement_id: '3749959'

As can be seen in this example, I have the Optimization toolbox licensed under my main Matlab license (123456 [actual number redacted]) until 31-mar-2018, and also licensed under a trial (DEMO) license that expires in 3 weeks. As long as a toolbox has any future expiration date, it will continue to function, so in this case I’m covered until March 2018.

We can also request information about a specific toolbox (“feature”):

>> data = matlab.internal.licensing.getFeatureInfo('matlab')
data = 
  3×1 struct array with fields:
>> data(1)
data = 
  struct with fields:
           feature: 'matlab'
           expdate: '31-mar-2018'
              keys: 0
    license_number: '123456'
    entitlement_id: '1409891'

The drawback of this functionality is that it only provides information about MathWorks’ toolbox, not any user-provided toolboxes (such as my IB-Matlab connector, or MathWorks’ own GUI Layout toolbox). Also, some of the toolbox names may be difficult to understand (“gads_toolbox” apparently stands for the Global Optimization Toolbox, for example):

>> {all_data.feature}
ans =
  1×23 cell array
  Columns 1 through 4
    'curve_fitting_toolbox'    'database_toolbox'    'datafeed_toolbox'    'distrib_computing_toolbox'
  Columns 5 through 8
    'distrib_computing_toolbox'    'excel_link'    'fin_instruments_toolbox'    'financial_toolbox'
  Columns 9 through 15
    'gads_toolbox'    'gads_toolbox'    'image_toolbox'    'image_toolbox'    'matlab'    'matlab'    'matlab'
  Columns 16 through 20
    'matlab_coder'    'matlab_coder'    'matlab_report_gen'    'matlab_report_gen'    'optimization_toolbox'
  Columns 21 through 23
    'optimization_toolbox'    'optimization_toolbox'    'statistics_toolbox'

A related undocumented builtin function is matlab.internal.licensing.getLicInfo:

% Information on a single toolbox/product:
>> matlab.internal.licensing.getLicInfo('matlab')
ans = 
  struct with fields:
     license_number: {'123456'  'Prerelease'  'T3749959'}
    expiration_date: {'31-mar-2018'  '30-sep-2016'  '07-mar-2017'}
% Information on multiple toolboxes/products:
>> matlab.internal.licensing.getLicInfo({'matlab', 'image_toolbox'})  % cell array of toolbox/feature names
ans = 
  1×2 struct array with fields:
% The full case-insensitive names of the toolboxes can also be used:
>> matlab.internal.licensing.getLicInfo({'Matlab', 'Image Processing toolbox'})
ans = 
  1×2 struct array with fields:
% And here's how to get the full list (MathWorks products only):
>> v=ver; data=matlab.internal.licensing.getLicInfo({v.Name})
data = 
  1×16 struct array with fields:

I have [still] not found any way to associate a user toolbox/product (such as my IB-Matlab) in a way that will report it in a unified manner with the MathWorks products. If anyone finds a way to do this, please do let me know.

p.s. – don’t even think of asking questions or posting comments on this website related to illegal uses or hacks of the Matlab license…

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Quirks with parfor vs. forhttps://undocumentedmatlab.com/blog/quirks-with-parfor-vs-for https://undocumentedmatlab.com/blog/quirks-with-parfor-vs-for#comments Thu, 05 Jan 2017 17:15:48 +0000 http://undocumentedmatlab.com/?p=6821
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A few months ago, I discussed several tips regarding Matlab’s parfor command, which is used by the Parallel Computing Toolbox (PCT) for parallelizing loops. Today I wish to extend that post with some unexplained oddities when using parfor, compared to a standard for loop.

Data serialization quirks

Dimitri Shvorob may not appear at first glance to be a prolific contributor on Matlab Central, but from the little he has posted over the years I regard him to be a Matlab power-user. So when Dimitri reports something, I take it seriously. Such was the case several months ago, when he contacted me regarding very odd behavior that he saw in his code: the for loop worked well, but the parfor version returned different (incorrect) results. Eventually, Dimitry traced the problem to something originally reported by Dan Austin on his Fluffy Nuke It blog.

The core issue is that if we have a class object that is used within a for loop, Matlab can access the object directly in memory. But with a parfor loop, the object needs to be serialized in order to be sent over to the parallel workers, and deserialized within each worker. If this serialization/deserialization process involves internal class methods, the workers might see a different version of the class object than the one seen in the serial for loop. This could happen, for example, if the serialization/deserialization method croaks on an error, or depends on some dynamic (or random) conditions to create data.

In other words, when we use data objects in a parfor loop, the data object is not necessarily sent “as-is”: additional processing may be involved under the hood that modify the data in a way that may be invisible to the user (or the loop code), resulting in different processing results of the parallel (parfor) vs. serial (for) loops.

For additional aspects of Matlab serialization/deserialization, see my article from 2 years ago (and its interesting feedback comments).

Data precision quirks

The following section was contributed by guest blogger Lior Perlmuter-Shoshany, head algorithmician at a private equity fund.

In my work, I had to work with matrixes in the order of 109 cells. To reduce the memory footprint (and hopefully also improve performance), I decided to work with data of type single instead of Matlab’s default double. Furthermore, in order to speed up the calculation I use parfor rather than for in the main calculation. In the end of the run I am running a mini for-loop to see the best results.

What I discovered to my surprise is that the results from the parfor and for loop variants is not the same!

The following simplified code snippet illustrate the problem by calculating a simple standard-deviation (std) over the same data, in both single– and double-precision. Note that the loops are ran with only a single iteration, to illustrate the fact that the problem is with the parallelization mechanism (probably the serialization/deserialization parts once again), not with the distribution of iterations among the workers.

% Prepare the data in both double and single precision
arr_double = rand(1,100000000);
arr_single = single(arr_double);
% No loop - direct computation
std_single0 = std(arr_single);
std_double0 = std(arr_double);
% Loop #1 - serial for loop
std_single = 0;
std_double = 0;
for i=1
    std_single(i) = std(arr_single);
    std_double(i) = std(arr_double);
% Loop #2 - parallel parfor loop
par_std_single = 0;
par_std_double = 0;
parfor i=1
    par_std_single(i) = std(arr_single);
    par_std_double(i) = std(arr_double);
% Compare results of for loop vs. non-looped computation
isForSingleOk = isequal(std_single, std_single0)
isForDoubleOk = isequal(std_double, std_double0)
% Compare results of single-precision data (for vs. parfor)
isParforSingleOk = isequal(std_single, par_std_single)
parforSingleAccuracy = std_single / par_std_single
% Compare results of double-precision data (for vs. parfor)
isParforDoubleOk = isequal(std_double, par_std_double)
parforDoubleAccuracy = std_double / par_std_double

Output example :

isForSingleOk = 
    1                   % <= true (of course!)
isForDoubleOk =
    1                   % <= true (of course!)
isParforSingleOk =
    0                   % <= false (odd!)
parforSingleAccuracy =
    0.73895227413361    % <= single-precision results are radically different in parfor vs. for
isParforDoubleOk =
    0                   % <= false (odd!)
parforDoubleAccuracy =
    1.00000000000021    % <= double-precision results are almost [but not exactly] the same in parfor vs. for

From my testing, the larger the data array, the bigger the difference is between the results of single-precision data when running in for vs. parfor.

In other words, my experience has been that if you have a huge data matrix, it’s better to parallelize it in double-precision if you wish to get [nearly] accurate results. But even so, I find it deeply disconcerting that the results are not exactly identical (at least on R2015a-R2016b on which I tested) even for the native double-precision .

Hmmm… bug?

Upcoming travels – Zürich & Geneva

I will shortly be traveling to clients in Zürich and Geneva, Switzerland. If you are in the area and wish to meet me to discuss how I could bring value to your work with some advanced Matlab consulting or training, then please email me (altmany at gmail):

  • Zürich: January 15-17
  • Geneva: January 18-21

Happy new year everybody!

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Afterthoughts on implicit expansionhttps://undocumentedmatlab.com/blog/afterthoughts-on-implicit-expansion https://undocumentedmatlab.com/blog/afterthoughts-on-implicit-expansion#comments Wed, 30 Nov 2016 20:28:44 +0000 http://undocumentedmatlab.com/?p=6750
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Matlab release R2016b introduced implicit arithmetic expansion, which is a great and long-awaited natural expansion of Matlab’s arithmetic syntax (if you are still unaware of this or what it means, now would be a good time to read about it). This is a well-documented new feature. The reason for today’s post is that this new feature contains an undocumented aspect that should very well have been documented and even highlighted.

The undocumented aspect that I’m referring to is the fact that code that until R2016a produced an error, in R2016b produces a valid result:

% R2016a
>> [1:5] + [1:3]'
Error using  + 
Matrix dimensions must agree.
% R2016b
>> [1:5] + [1:3]'
ans =
     2     3     4     5     6
     3     4     5     6     7
     4     5     6     7     8

This incompatibility is indeed documented, but not where it matters most (read on).

I first discovered this feature by chance when trying to track down a very strange phenomenon with client code that produced different numeric results on R2015b and earlier, compared to R2016a Pre-release. After some debugging the problem was traced to a code snippet in the client’s code that looked something like this (simplified):

% Ensure compatible input data
    dataA + dataB;  % this will (?) error if dataA, dataB are incompatible
    dataB = dataB';

The code snippet relied on the fact that incompatible data (row vs. col) would error when combined, as it did up to R2015b. But in R2016a Pre-release it just gave a valid numeric matrix, which caused numerically incorrect results downstream in the code. The program never crashed, so everything appeared to be in order, it just gave different numeric results. I looked at the release notes and none of the mentioned release incompatibilities appeared relevant. It took me quite some time, using side-by-side step-by-step debugging on two separate instances of Matlab (R2015b and R2016aPR) to trace the problem to this new feature.

This implicit expansion feature was removed from the official R2016a release for performance reasons. This was apparently fixed in time for R2016b’s release.

I’m totally in favor of this great new feature, don’t get me wrong. I’ve been an ardent user of bsxfun for many years and (unlike many) have even grown fond of it, but I still find the new feature to be better. I use it wherever there is no significant performance penalty, a need to support older Matlab releases, or a possibility of incorrect results due to dimensional mismatch.

So what’s my point?

What I am concerned about is that I have not seen the new feature highlighted as a potential backward compatibility issue in the documentation or the release notes. Issues of far lesser importance are clearly marked for their backward incompatibility in the release notes, but not this important major change. A simple marking of the new feature with the warning icon () and in the “Functionality being removed or changed” section would have saved my client and me a lot of time and frustration.

MathWorks are definitely aware of the potential problems that the new feature might cause in rare use cases such as this. As Steve Eddins recently noted, there were plenty of internal discussions about this very thing. MathWorks were careful to ensure that the feature’s benefits far outweigh its risks (and I concur). But this also highlights the fact that MathWorks were fully aware that in some rare cases it might indeed break existing code. For those cases, I believe that they should have clearly marked the incompatibility implications in the release notes and elsewhere.

I have several clients who scour Matlab’s release notes before each release, trying to determine the operational risk of a Matlab upgrade. Having a program that returns different results in R2016b compared to R2016a, without being aware of this risk, is simply unacceptable to them, and leaves users with a disinclination to upgrade Matlab, to MathWorks’ detriment.

MathWorks in general are taking a very serious methodical approach to compatibility issues, and are clearly investing a lot of energy in this (a recent example). It’s too bad that sometimes this chain is broken. I find it a pity, and think that this can still be corrected in the online doc pages. If and when this is fixed, I’ll be happy to post an addendum here.

In my humble opinion from the backbenches, increasing the transparency on compatibility issues and open bugs will increase user confidence and result in greater adoption and upgrades of Matlab. Just my 2 cents…

Addendum December 27, 2016:

Today MathWorks added the following compatibility warning to the release notes (R2016b, Mathematics section, first item) – thanks for listening MathWorks :-)

MathWorks compatibility warning

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Speeding up Matlab-JDBC SQL querieshttps://undocumentedmatlab.com/blog/speeding-up-matlab-jdbc-sql-queries https://undocumentedmatlab.com/blog/speeding-up-matlab-jdbc-sql-queries#comments Wed, 16 Nov 2016 11:43:17 +0000 http://undocumentedmatlab.com/?p=6742
Related posts:
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Many of my consulting projects involve interfacing a Matlab program to an SQL database. In such cases, using MathWorks’ Database Toolbox is a viable solution. Users who don’t have the toolbox can also easily connect directly to the database using either the standard ODBC bridge (which is horrible for performance and stability), or a direct JDBC connection (which is also what the Database Toolbox uses under the hood). I explained this Matlab-JDBC interface in detail in chapter 2 of my Matlab-Java programming book. A bare-bones implementation of an SQL SELECT query follows (data update queries are a bit different and will not be discussed here):

% Load the appropriate JDBC driver class into Matlab's memory
% (but not directly, to bypass JIT pre-processing - we must do it in run-time!)
driver = eval('com.mysql.jdbc.Driver');  % or com.microsoft.sqlserver.jdbc.SQLServerDriver or whatever
% Connect to DB
dbPort = '3306'; % mySQL=3306; SQLServer=1433; Oracle=...
connectionStr = ['jdbc:mysql://' dbURL ':' dbPort '/' schemaName];  % or ['jdbc:sqlserver://' dbURL ':' dbPort ';database=' schemaName ';'] or whatever
dbConnObj = java.sql.DriverManager.getConnection(connectionStr, username, password);
% Send an SQL query statement to the DB and get the ResultSet
stmt = dbConnObj.createStatement(java.sql.ResultSet.TYPE_SCROLL_INSENSITIVE, java.sql.ResultSet.CONCUR_READ_ONLY);
try stmt.setFetchSize(1000); catch, end  % the default fetch size is ridiculously small in many DBs
rs = stmt.executeQuery(sqlQueryStr);
% Get the column names and data-types from the ResultSet's meta-data
MetaData = rs.getMetaData;
numCols = MetaData.getColumnCount;
data = cell(0,numCols);  % initialize
for colIdx = numCols : -1 : 1
    ColumnNames{colIdx} = char(MetaData.getColumnLabel(colIdx));
    ColumnType{colIdx}  = char(MetaData.getColumnClassName(colIdx));  % http://docs.oracle.com/javase/7/docs/api/java/sql/Types.html
ColumnType = regexprep(ColumnType,'.*\.','');
% Get the data from the ResultSet into a Matlab cell array
rowIdx = 1;
while rs.next  % loop over all ResultSet rows (records)
    for colIdx = 1 : numCols  % loop over all columns in the row
        switch ColumnType{colIdx}
            case {'Float','Double'}
                data{rowIdx,colIdx} = rs.getDouble(colIdx);
            case {'Long','Integer','Short','BigDecimal'}
                data{rowIdx,colIdx} = double(rs.getDouble(colIdx));
            case 'Boolean'
                data{rowIdx,colIdx} = logical(rs.getBoolean(colIdx));
            otherwise %case {'String','Date','Time','Timestamp'}
                data{rowIdx,colIdx} = char(rs.getString(colIdx));
    rowIdx = rowIdx + 1;
% Close the connection and clear resources
try rs.close();   catch, end
try stmt.close(); catch, end
try dbConnObj.closeAllStatements(); catch, end
try dbConnObj.close(); catch, end  % comment this to keep the dbConnObj open and reuse it for subsequent queries

Naturally, in a real-world implementation you also need to handle database timeouts and various other errors, handle data-manipulation queries (not just SELECTs), etc.

Anyway, this works well in general, but when you try to fetch a ResultSet that has many thousands of records you start to feel the pain – The SQL statement may execute much faster on the DB server (the time it takes for the stmt.executeQuery call), yet the subsequent double-loop processing to fetch the data from the Java ResultSet object into a Matlab cell array takes much longer.

In one of my recent projects, performance was of paramount importance, and the DB query speed from the code above was simply not good enough. You might think that this was due to the fact that the data cell array is not pre-allocated, but this turns out to be incorrect: the speed remains nearly unaffected when you pre-allocate data properly. It turns out that the main problem is due to Matlab’s non-negligible overhead in calling methods of Java objects. Since the JDBC interface only enables retrieving a single data item at a time (in other words, bulk retrieval is not possible), we have a double loop over all the data’s rows and columns, in each case calling the appropriate Java method to retrieve the data based on the column’s type. The Java methods themselves are extremely efficient, but when you add Matlab’s invocation overheads the total processing time is much much slower.

So what can be done? As Andrew Janke explained in much detail, we basically need to push our double loop down into the Java level, so that Matlab receives arrays of primitive values, which can then be processed in a vectorized manner in Matlab.

So let’s create a simple Java class to do this:

// Copyright (c) Yair Altman UndocumentedMatlab.com
import java.sql.ResultSet;
import java.sql.ResultSetMetaData;
import java.sql.SQLException;
import java.sql.Types;
public class JDBC_Fetch {
	public static int DEFAULT_MAX_ROWS = 100000;   // default cache size = 100K rows (if DB does not support non-forward-only ResultSets)
	public static Object[] getData(ResultSet rs) throws SQLException {
		try {
			if (rs.last()) {  // data is available
				int numRows = rs.getRow();    // row # of the last row
				rs.beforeFirst();             // get back to the top of the ResultSet
				return getData(rs, numRows);  // fetch the data
			} else {  // no data in the ResultSet
				return null;
		} catch (Exception e) {
			return getData(rs, DEFAULT_MAX_ROWS);
	public static Object[] getData(ResultSet rs, int maxRows) throws SQLException {
		// Read column number and types from the ResultSet's meta-data
		ResultSetMetaData metaData = rs.getMetaData();
		int numCols = metaData.getColumnCount();
		int[] colTypes = new int[numCols+1];
		int numDoubleCols = 0;
		int numBooleanCols = 0;
		int numStringCols = 0;
		for (int colIdx = 1; colIdx <= numCols; colIdx++) {
			int colType = metaData.getColumnType(colIdx);
			switch (colType) {
				case Types.FLOAT:
				case Types.DOUBLE:
				case Types.REAL:
					colTypes[colIdx] = 1;  // double
				case Types.DECIMAL:
				case Types.INTEGER:
				case Types.TINYINT:
				case Types.SMALLINT:
				case Types.BIGINT:
					colTypes[colIdx] = 1;  // double
				case Types.BIT:
				case Types.BOOLEAN:
					colTypes[colIdx] = 2;  // boolean
				default: // 'String','Date','Time','Timestamp',...
					colTypes[colIdx] = 3;  // string
		// Loop over all ResultSet rows, reading the data into the 2D matrix caches
		int rowIdx = 0;
		double [][] dataCacheDouble  = new double [numDoubleCols] [maxRows];
		boolean[][] dataCacheBoolean = new boolean[numBooleanCols][maxRows];
		String [][] dataCacheString  = new String [numStringCols] [maxRows];
		while (rs.next() && rowIdx < maxRows) {
			int doubleColIdx = 0;
			int booleanColIdx = 0;
			int stringColIdx = 0;
			for (int colIdx = 1; colIdx <= numCols; colIdx++) {
				try {
					switch (colTypes[colIdx]) {
						case 1:  dataCacheDouble[doubleColIdx++][rowIdx]   = rs.getDouble(colIdx);   break;  // numeric
						case 2:  dataCacheBoolean[booleanColIdx++][rowIdx] = rs.getBoolean(colIdx);  break;  // boolean
						default: dataCacheString[stringColIdx++][rowIdx]   = rs.getString(colIdx);   break;  // string
				} catch (Exception e) {
					System.out.println(" in row #" + rowIdx + ", col #" + colIdx);
		// Return only the actual data in the ResultSet
		int doubleColIdx = 0;
		int booleanColIdx = 0;
		int stringColIdx = 0;
		Object[] data = new Object[numCols];
		for (int colIdx = 1; colIdx <= numCols; colIdx++) {
			switch (colTypes[colIdx]) {
				case 1:   data[colIdx-1] = dataCacheDouble[doubleColIdx++];    break;  // numeric
				case 2:   data[colIdx-1] = dataCacheBoolean[booleanColIdx++];  break;  // boolean
				default:  data[colIdx-1] = dataCacheString[stringColIdx++];            // string
		return data;

So now we have a JDBC_Fetch class that we can use in our Matlab code, replacing the slow double loop with a single call to JDBC_Fetch.getData(), followed by vectorized conversion into a Matlab cell array (matrix):

% Get the data from the ResultSet using the JDBC_Fetch wrapper
data = cell(JDBC_Fetch.getData(rs));
for colIdx = 1 : numCols
   switch ColumnType{colIdx}
      case {'Float','Double'}
          data{colIdx} = num2cell(data{colIdx});
      case {'Long','Integer','Short','BigDecimal'}
          data{colIdx} = num2cell(data{colIdx});
      case 'Boolean'
          data{colIdx} = num2cell(data{colIdx});
      otherwise %case {'String','Date','Time','Timestamp'}
          %data{colIdx} = cell(data{colIdx});  % no need to do anything here!
data = [data{:}];

On my specific program the resulting speedup was 15x (this is not a typo: 15 times faster). My fetches are no longer limited by the Matlab post-processing, but rather by the DB’s processing of the SQL statement (where DB indexes, clustering, SQL tuning etc. come into play).

Additional speedups can be achieved by parsing dates at the Java level (rather than returning strings), as well as several other tweaks in the Java and Matlab code (refer to Andrew Janke’s post for some ideas). But certainly the main benefit (the 80% of the gain that was achieved in 20% of the worktime) is due to the above push of the main double processing loop down into the Java level, leaving Matlab with just a single Java call to JDBC_Fetch.

Many additional ideas of speeding up database queries and Matlab programs in general can be found in my second book, Accelerating Matlab Performance.

If you’d like me to help you speed up your Matlab program, please email me (altmany at gmail), or fill out the query form on my consulting page.

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Working with non-standard DPI displayshttps://undocumentedmatlab.com/blog/working-with-non-standard-dpi-displays https://undocumentedmatlab.com/blog/working-with-non-standard-dpi-displays#comments Wed, 09 Nov 2016 21:47:27 +0000 http://undocumentedmatlab.com/?p=6736
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  2. FindJObj GUI – display container hierarchy The FindJObj utility can be used to present a GUI that displays a Matlab container's internal Java components, properties and callbacks....
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With high-density displays becoming increasingly popular, some users set their display’s DPI to a higher-than-standard (i.e., >100%) value, in order to compensate for the increased pixel density to achieve readable interfaces. This OS setting tells the running applications that there are fewer visible screen pixels, and these are spread over a larger number of physical pixels. This works well for most cases (at least on recent OSes, it was a bit buggy in non-recet ones). Unfortunately, in some cases we might actually want to know the screen size in physical, rather than logical, pixels. Apparently, Matlab root’s ScreenSize property only reports the logical (scaled) pixel size, not the physical (unscaled) one:

>> get(0,'ScreenSize')   % with 100% DPI (unscaled standard)
ans =
        1       1      1366       768
>> get(0,'ScreenSize')   % with 125% DPI (scaled)
ans =
        1       1      1092.8     614.4

The same phenomenon also affects other related properties, for example MonitorPositions.

Raimund Schlüßler, a reader on this blog, was kind enough to point me to this problem and its workaround, which I thought worthy to share here: To get the physical screen-size, use the following builtin Java command:

>> jScreenSize = java.awt.Toolkit.getDefaultToolkit.getScreenSize
jScreenSize =
>> width = jScreenSize.getWidth
width =
>> height = jScreenSize.getHeight
height =

Also see the related recent article on an issue with the DPI-aware feature starting with R2015b.

Upcoming travels – London/Belfast, Zürich & Geneva

I will shortly be traveling to consult some clients in Belfast (via London), Zürich and Geneva. If you are in the area and wish to meet me to discuss how I could bring value to your work, then please email me (altmany at gmail):

  • Belfast: Nov 28 – Dec 1 (flying via London)
  • Zürich: Dec 11-12
  • Geneva: Dec 13-15
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uigetfile/uiputfile customizationshttps://undocumentedmatlab.com/blog/uigetfile-uiputfile-customizations https://undocumentedmatlab.com/blog/uigetfile-uiputfile-customizations#comments Wed, 02 Nov 2016 23:38:57 +0000 http://undocumentedmatlab.com/?p=6728
Related posts:
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Matlab includes a few built-in file and folder selection dialog windows, namely uigetfile, uiputfile and uigetdir. Unfortunately, these functions are not easily extendable for user-defined functionalities. Over the years, several of my consulting clients have asked me to provide them with versions of these dialog functions that are customized in certain ways. In today’s post I discuss a few of these customizations: a file selector dialog with a preview panel, and automatic folder update as-you-type in the file-name edit box.

It is often useful to have an integrated preview panel to display the contents of a file in a file-selection dialog. Clicking the various files in the tree-view would display a user-defined preview in the panel below, based on the file’s contents. An integrated panel avoids the need to manage multiple figure windows, one for the selector dialog and another for the preview. It also reduces the screen real-estate used by the dialog (also see the related resizing customization below).

I call the end-result uigetfile_with_preview; you can download it from the Matlab File Exchange:

filename = uigetfile_with_preview(filterSpec, prompt, folder, callbackFunction, multiSelectFlag)


As you can see from the function signature, the user can specify the file-type filter, prompt and initial folder (quite similar to uigetfile, uiputfile), as well as a custom callback function for updating the preview of a selected file, and a flag to enable selecting multiple files (not just one).

uigetfile_with_preview.m only has ~120 lines of code and plenty of comments, so feel free to download and review the code. It uses the following undocumented aspects:

  1. I used a com.mathworks.hg.util.dFileChooser component for the main file selector. This is a builtin Matlab control that extends the standard javax.swing.JFileChooser with a few properties and methods. I don’t really need the extra features, so you can safely replace the component with a JFileChooser if you wish (lines 54-55). Various properties of the file selector are then set, such as the folder that is initially displayed, the multi-selection flag, the component background color, and the data-type filter options.
  2. I used the javacomponent function to place the file-selector component within the dialog window.
  3. I set a callback on the component’s PropertyChangeCallback that is invoked whenever the user interactively selects a new file. This callback clears the preview panel and then calls the user-defined callback function (if available).
  4. I set a callback on the component’s ActionPerformedCallback that is invoked whenever the user closes the figure or clicks the “Open” button. The selected filename(s) is/are then returned to the caller and the dialog window is closed.
  5. I set a callback on the component’s file-name editbox’s KeyTypedCallback that is invoked whenever the user types in the file-name editbox. The callback checks whether the entered text looks like a valid folder path and if so then it automatically updates the displayed folder as-you-type.

If you want to convert the code to a uiputfile variant, add the following code lines before the uiwait in line 111:

hjFileChooser.setShowOverwriteDialog(true);  % default: false (true will display a popup alert if you select an existing file)
hjFileChooser.setDialogType(hjFileChooser.java.SAVE_DIALOG);  % default: OPEN_DIALOG
hjFileChooser.setApproveButtonText('Save');  % or any other string. Default for SAVE_DIALOG: 'Save'
hjFileChooser.setApproveButtonToolTipText('Save file');  % or any other string. Default for SAVE_DIALOG: 'Save selected file'

In memory of my dear father.

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Icon images & text in Matlab uicontrolshttps://undocumentedmatlab.com/blog/icon-images-in-matlab-uicontrols https://undocumentedmatlab.com/blog/icon-images-in-matlab-uicontrols#comments Wed, 28 Sep 2016 10:28:04 +0000 http://undocumentedmatlab.com/?p=6687
Related posts:
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  2. Rich-contents log panel Matlab listboxes and editboxes can be used to display rich-contents HTML-formatted strings, which is ideal for log panels. ...
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One of my consulting clients recently asked me if I knew any builtin Matlab GUI control that could display a list of colormap names alongside their respective image icons, in a listbox or popup menu (drop-down/combo-box):

Matlab listbox with icon images   Matlab popup menu (dropdown/combobox) with icon images

Matlab listbox (left) & popup menu (right) with icon images

My initial thought was that this should surely be possible, since Colormap is a documented figure property, that should therefore be listed inside the inspector window, and should therefore have an associated builtin Java control for the dropdown (just like other inspector controls, which are part of the com.mathworks.mlwidgets package, or possibly as a standalone control in the com.mathworks.mwswing package). To my surprise it turns out that for some unknown reason MathWorks neglected to add the Colormap property (and associated Java controls) to the inspector. This property is fully documented and all, just like Color and other standard figure properties, but unlike them Colormap can only be modified programmatically, not via the inspector window. Matlab does provide the related colormapeditor function and associated dialog window, but I would have expected a simple drop-down of the standard builtin colormaps to be available in the inspector. Anyway, this turned out to be a dead-end.

It turns out that we can relatively easily implement the requested listbox/combo-box using a bit of HTML magic, as I explained last week. The basic idea is for each of the listbox/combobox items to be an HTML string that contains both an <img> tag for the icon and the item label text. For example, such a string might contain something like this (parula is Matlab’s default colormap in HG2, starting in R2014b):

<html><img src="http://www.mathworks.com/help/matlab/ref/colormap_parula.png">parula

parula colormap image

parula colormap image

Of course, it would be a bit inefficient for each of the icons to be fetched from the internet. Luckily, the full set of Matlab documentation is typically installed on the local computer as part of the standard Matlab installation, beneath the docroot folder (e.g., C:\Program Files\Matlab\R2016b\help). In our specific case, the parula colormap image is located in:

imageFilename = [docroot, '/matlab/ref/colormap_parula.png']

Note that for a local image to be accepted by HTML, it needs to follow certain conventions. In our case, the HTML string for displaying the above image is:

<html><img src="file:///C:/Program%20Files/Matlab/R2016b/help/matlab/ref/colormap_parula.png">parula

Warning: it’s easy when dealing with HTML images in Matlab to get the format confused, resulting in a red-x icon. I discussed this issue some 4 years ago, which is still relevant.

How can we get the list of available builtin colormaps? The standard Matlab way of doing this would be something like this:

>> possibleColormaps = set(gcf,'Colormap')
possibleColormaps = 

but as we can see, for some unknown reason (probably another MathWorks omission), Matlab does not list the names of its available builtin colormaps.

Fortunately, all the builtin colormaps have image filenames that follow the same convention, which make it easy to get this list by simply listing the names of the relevant files, from which we can easily create the necessary HTML strings:

>> iconFiles = dir([docroot, '/matlab/ref/colormap_*.png']);
>> colormapNames = regexprep({iconFiles.name}, '.*_(.*).png', '$1')
colormapNames =  
  Columns 1 through 9
    'autumn'    'bone'    'colorcube'    'cool'    'copper'    'flag'    'gray'    'hot'    'hsv'
  Columns 10 through 18
    'jet'    'lines'    'parula'    'pink'    'prism'    'spring'    'summer'    'white'    'winter'
>> htmlStrings = strcat('<html><img width=200 height=10 src="file:///C:/Program%20Files/Matlab/R2016a/help/matlab/ref/colormap_', colormapNames', '.png">', colormapNames')
str = 
    '<html><img width=200 height=10 src="file:///C:/Program%20Files/Matlab/R2016a/help/matlab/ref/colormap_autumn.png">autumn'
    '<html><img width=200 height=10 src="file:///C:/Program%20Files/Matlab/R2016a/help/matlab/ref/colormap_bone.png">bone'
    '<html><img width=200 height=10 src="file:///C:/Program%20Files/Matlab/R2016a/help/matlab/ref/colormap_colorcube.png">colorcube'
>> hListbox = uicontrol(gcf, 'Style','listbox', 'Units','pixel', 'Pos',[10,10,270,200], 'String',htmlStrings);
>> hPopup   = uicontrol(gcf, 'Style','popup',   'Units','pixel', 'Pos',[10,500,270,20], 'String',htmlStrings);

…which results in the screenshots at the top of this post.

Note how I scaled the images to 10px high (so that the labels would be shown and not cropped vertically) and 200px wide (so that it becomes narrower than the default 434px). There’s really no need in this case for the full 434×27 image size – such flat images scale very nicely, even when their aspect ratio is not preserved. You can adjust the height and width values for a best fit with you GUI.

Unfortunately, it seems that HTML strings are not supported in the new web-based uifigure controls. This is not really Matlab’s fault because the way to customize labels in HTML controls is via CSS: directly embedding HTML code in labels does not work (it’s a Java-Swing feature, not a browser feature). I really hope that either HTML or CSS processing will be enabled for web-based uicontrol in a future Matlab release, because until that time uifigure uicontrols will remain seriously deficient compared to standard figure uicontrols. Until then, if we must use uifigures and wish to customize our labels or listbox items, we can directly access the underlying web controls, as Iliya explained here.

A blog reader recently complained that I’m abusing Swing and basically making Matlab work in unnatural ways, “something it was never meant to be“. I feel that using HTML as I’ve shown last week and in this post would fall under the same category in his eyes. To him and to others who complain I say that I have absolutely no remorse about doing this. When I purchase anything I have the full rights (within the scope of the license) to adapt it in whatever way fits my needs. As a software developer and manager for over 25 years, I’ve developed in dozens of programming languages and environments, and I still enjoy [ab]using Matlab. Matlab is a great environment to get things done quickly and if this sometimes requires a bit of HTML or Java hacks that make some people cringe, then that’s their problem, not mine – I’m content with being able to do in Matlab [nearly] everything I want, quickly, and move on to the next project. As long as it gets the job done, that’s fine by me. If this makes me more of an engineer than a computer scientist, then so be it.

On the flip side, I say to those who claim that Matlab is lacking in this or that aspect, that in most likelihood the limitation is only in their minds, not in Matlab – we can do amazing stuff with Matlab if we just open our minds, and possibly use some undocumented hacks. I’m not saying that Matlab has no limitations, I’m just saying that in most cases they can be overcome if we took the time and trouble to look for a solution. Matlab is a great tool and yet many people are not aware of its potential. Blaming Matlab for its failings is just an easy excuse in many cases. Of course, MathWorks could help my crusade on this subject by enabling useful features such as easy GUI component customizations…

On this sad day, I wish you all Shanah Tova!

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Aligning uicontrol contentshttps://undocumentedmatlab.com/blog/aligning-uicontrol-contents https://undocumentedmatlab.com/blog/aligning-uicontrol-contents#comments Thu, 22 Sep 2016 13:10:18 +0000 http://undocumentedmatlab.com/?p=6663
Related posts:
  1. Spicing up Matlab uicontrol tooltips Matlab uicontrol tooltips can be spiced-up using HTML and CSS, including fonts, colors, tables and images...
  2. Rich-contents log panel Matlab listboxes and editboxes can be used to display rich-contents HTML-formatted strings, which is ideal for log panels. ...
  3. Multi-line uitable column headers Matlab uitables can present long column headers in multiple lines, for improved readability. ...
  4. Undocumented button highlighting Matlab button uicontrols can easily be highlighted by simply setting their Value property. ...
Matlab automatically aligns the text contents of uicontrols: button labels are centered, listbox contents are left-aligned, and table cells align depending on their contents (left-aligned for strings, centered for logical values, and right-aligned for numbers). Unfortunately, the control’s HorizontalAlignment property is generally ignored by uicontrols. So how can we force Matlab buttons (for example) to have right-aligned labels, or for listbox/table cells to be centered? Undocumented Matlab has the answer, yet again…

It turns out that there are at least two distinct ways to set uicontrol alignment, using HTML and using Java. Today I will only discuss the HTML variant.

The HTML method relies on the fact that Matlab uicontrols accept and process HTML strings. This was true ever since Matlab GUI started relying on Java Swing components (which inherently accept HTML labels) over a decade ago. This is expected to remain true even in Matlab’s upcoming web-based GUI system, since Matlab would need to consciously disable HTML in its web components, and I see no reason for MathWorks to do so. In short, HTML parsing of GUI control strings is here to stay for the foreseeable future.

% note: no need to close HTML tags, e.g. </font></html>
uicontrol('Style','list', 'Position',[10,10,70,70], 'String', ...
          {'<HTML><FONT color="red">Hello</Font></html>', 'world', ...
           '<html><font style="font-family:impact;color:green"><i>What a', ...
           '<Html><FONT color="blue" face="Comic Sans MS">nice day!'});

Listbox with HTML items

Listbox with HTML items

While HTML formatting is generally frowned-upon compared to the alternatives, it provides a very quick and easy way to format text labels in various different manners, including using a combination of font faces, sizes, colors and other aspects (bold, italic, super/sub-script, underline etc.) within a single text label. This is naturally impossible to do with Matlab’s standard properties, but is super-easy with HTML placed in the label’s String property.

Unfortunately, while Java Swing (and therefore Matlab) honors only a [large] sub-set of HTML and CSS. The most important directives are parsed but some others are not, and this is often difficult to debug. Luckily, using HTML and CSS there are often multiple ways to achieve the same visual effect, so if one method fails we can usually find an alternative. Such was the case when a reader asked me why the following seemingly-simple HTML snippet failed to right-align his button label:

hButton.String = '<html><div style="text-align:right">text';

As I explained in my answer, it’s not Matlab that ignores the CSS align directive but rather the underlying Swing behavior, which snugly fits the text in the center of the button, and of course aligning text within a tight-fitting box has no effect. The workaround that I suggested simply forces Swing to use a non-tightly-fitting boundary box, within which we can indeed align the text:

pxPos = getpixelposition(hButton);
hButton.String = ['<html><div width="' num2str(pxPos(3)-20) 'px" align="right">text'];  % button margins use 20px

centered (default) button label   right-aligned button label

Centered (default) and right-aligned button labels

This solution is very easy to set up and maintain, and requires no special knowledge other than a bit of HTML/CSS, which most programmers know in this day and age.

Of course, the solution relies on the actual button size. So, if the button is created with normalized units and changes its size when its parent container is resized, we’d need to set a callback function on the parent (e.g., SizeChangedFcn of a uipanel) to automatically adjust the button’s string based on its updated size. A better solution that would be independent of the button’s pixel-size and would work even when the button is resized needs to use Java.

A related solution for table cells uses a different HTML-based trick: this time, we embed an HTML table cell within the Matlab control’s cell, employing the fact that HTML table cells can easily be aligned. We just need to ensure that the HTML cell is defined to be larger than the actual cell width, so that the alignment fits well. We do this by setting the HTML cell width to 9999 pixels (note that the tr and td HTML tags are necessary, but the table tag is optional):

uitable('Units','norm','Pos',[0,0,0.3,0.3], 'Data', ...
        {'Left', ...
         '<html><tr><td align=center width=9999>Center', ...
         '<html><tr><td align=right  width=9999>Right'});

Non-default alignment of uitable cells

Non-default alignment of uitable cells

As noted above, a better solution might be to set the underlying Java component’s alignment properties (or in the case of the uitable, its underlying JTable component’s cellrenderer’s alignment). But in the general case, simple HTML such as above could well be sufficient.

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Customizing uifigures part 2https://undocumentedmatlab.com/blog/customizing-uifigures-part-2 https://undocumentedmatlab.com/blog/customizing-uifigures-part-2#comments Wed, 07 Sep 2016 17:00:57 +0000 http://undocumentedmatlab.com/?p=6635
Related posts:
  1. uiundo – Matlab’s undocumented undo/redo manager The built-in uiundo function provides easy yet undocumented access to Matlab's powerful undo/redo functionality. This article explains its usage....
  2. FindJObj – find a Matlab component’s underlying Java object The FindJObj utility can be used to access and display the internal components of Matlab controls and containers. This article explains its uses and inner mechanism....
  3. Uitable sorting Matlab's uitables can be sortable using simple undocumented features...
  4. Frameless (undecorated) figure windows Matlab figure windows can be made undecorated (borderless, title-less). ...
I would like to introduce guest blogger Iliya Romm of Israel’s Technion Turbomachinery and Heat Transfer Laboratory. Today Iliya will discuss how Matlab’s new web-based figures can be customized with user-controlled CSS and JavaScript code.

When we compare the documented properties of a “classic” uicontrol with an App Designer control such as uicheckbox, we see lists of 42 and 15 properties, respectively. At first glance, this implies that our ability to customize App Designer elements is relatively very limited. This is surely a disquieting conclusion, especially for those used to being able to change most aspect of their Matlab figures via Java. Fortunately, such a conclusion is quite far from reality, as we will shortly see.

To understand this claim, we need to consider a previous post on this blog, where Yair discussed how uifigures are actually HTML webpages rendered by Matlab. As such, they have a DOM that can be accessed and manipulated through JavaScript commands to achieve various visual customizations. Today we’ll explore the structure of the uifigure webpage; take a look at some possibilities provided by the Dojo Toolkit; and see how to use Dojo to customize uifigure controls visually using CSS styles and/or HTML attributes.

User customizations of Matlab uifigures (click to zoom-in)
User customizations of Matlab uifigures (click to zoom-in)

A brief introduction to CSS

CSS stands for Cascading Style Sheets. As described on the official webpage of W3C (which governs web standards):

CSS is the language for describing the presentation of Web pages, including colors, layout, and fonts. CSS is independent of HTML. This is referred to as the separation of structure (or: content) from presentation.

CSS rules (or “styles”) can be defined in one of three places:

  • A separate file, such as the main.css that Matlab uses for uifigures (this file is found minified in %matlabroot%\toolbox\matlab\uitools\uifigureappjs\release\gbtclient\css)
  • An inline block inside the HTML’s <head> section
  • Directly within a DOM node

Deciding which of the above to use, is largely a choice of the right tool for the job. Usually, the first two choices should be preferred, as they adhere to the “separation of structure and presentation” idea better. However, in the scope of this demonstration, we’ll be using mostly the 3rd option, because it allows us not to worry about possible CSS precedence issues (suggested read).

The syntax of CSS is generally: selector { property: value }, but it can have other forms as well.

Getting down to business

Let us consider a very basic uifigure that only contains a uitextarea and its label:

Simple demo uifigure with a TextArea and label

Simple demo uifigure with a TextArea and label

The auto-generated code for it is:

classdef DOMdemo < matlab.apps.AppBase
    % Properties that correspond to app components
    properties (Access = public)
        UIFigure      matlab.ui.Figure           % UI Figure
        LabelTextArea matlab.ui.control.Label    % Text Area
        TextArea      matlab.ui.control.TextArea % This is some text.        
    methods (Access = private)
        % Code that executes after component creation
        function startupFcn(app)
    % App initialization and construction
    methods (Access = private)
        % Create UIFigure and components
        function createComponents(app)
            % Create UIFigure
            app.UIFigure = uifigure;
            app.UIFigure.Position = [100 100 280 102];
            app.UIFigure.Name = 'UI Figure';
            setAutoResize(app, app.UIFigure, true)
            % Create LabelTextArea
            app.LabelTextArea = uilabel(app.UIFigure);
            app.LabelTextArea.HorizontalAlignment = 'right';
            app.LabelTextArea.Position = [16 73 62 15];
            app.LabelTextArea.Text = 'Text Area';
            % Create TextArea
            app.TextArea = uitextarea(app.UIFigure);
            app.TextArea.Position = [116 14 151 60];
            app.TextArea.Value = {'This is some text.'};
    methods (Access = public)
        % Construct app
        function app = DOMdemo()
            % Create and configure components
            % Register the app with App Designer
            registerApp(app, app.UIFigure)
            % Execute the startup function
            runStartupFcn(app, @startupFcn)
            if nargout == 0
                clear app
        % Code that executes before app deletion
        function delete(app)
            % Delete UIFigure when app is deleted

Let’s say we want to modify certain aspects of the TextArea widget, such as the text color, background, and/or horizontal alignment. The workflow for styling elements involves:

  1. Find the handle to the webfigure
  2. Find the DOM node we want to modify
  3. Find the property name that corresponds to the change we want
  4. Find a way to manipulate the desired node from Matlab

Step 1: Find the handle to the webfigure

The first thing we need to do is to strategically place a bit of code that would allow us to get the URL of the figure so we can inspect it in our browser:

function startupFcn(app)
   % Customizations (aka "MAGIC GOES HERE"):
   warning off Matlab:HandleGraphics:ObsoletedProperty:JavaFrame
   warning off Matlab:structOnObject    
   while true
         win = struct(struct(struct(app).UIFigure).Controller).Container.CEF;
         disp('Not ready yet!');
         pause(0.5); % Give the figure (webpage) some more time to load

This code waits until the page is sufficiently loaded, and then retrieve its local address (URL). The result will be something like this, which can be directly opened in any browser (outside Matlab):


Step 2: Find the DOM node that corresponds to the component that we want to modify

Loading this URL in an external browser (e.g., Chrome, Firefox or IE/Edge) enables us to use web-development addins (e.g., FireBug) to inspect the page contents (source-code). Opening the URL inside a browser and inspecting the page contents, we can see its DOM:

Inspecting the DOM in Firefox (click to zoom-in)
Inspecting the DOM in Firefox (click to zoom-in)

Notice the three data-tag entries marked by red frames. Any idea why there are exactly three nonempty tags like that? This is because our App Designer object, app, contains 3 declared children, as defined in:

    app.UIFigure = uifigure;
    app.LabelTextArea = uilabel(app.UIFigure);
    app.TextArea = uitextarea(app.UIFigure);

… and each of them is assigned a random hexadecimal id whenever the app is opened.

Finding the relevant node involved some trial-and-error, but after doing it several times I seem to have found a consistent pattern that can be used to our advantage. Apparently, the nodes with data-tag are always above the element we want to style, sometimes as a direct parent and sometimes farther away. So why do we even need to bother with choosing more accurate nodes than these “tagged” ones? Shouldn’t styles applied to the tagged nodes cascade down to the element we care about? Sure, sometimes it works like that, but we want to do better than “sometimes”. To that end, we would like to select as relevant a node as possible.

Anyway, the next step in the program is to find the data-tag that corresponds to the selected component. Luckily, there is a direct (undocumented) way to get it:

% Determine the data-tag of the DOM component that we want to modify:
hComponent = app.TextArea;  % handle to the component that we want to modify
data_tag = char(struct(hComponent).Controller.ProxyView.PeerNode.getId);  % this part is generic: can be used with any web-based GUI component

Let’s take a look at the elements marked with blue and green borders (in that order) in the DOM screenshot. We see that the data-tag property is exactly one level above these elements, in other words, the first child of the tagged node is an element that contains a widgetid property. This property is very important, as it contains the id of the node that we actually want to change. Think pointers. To summarize this part:

data-tag   =>   widgetid   =>   widget “handle”

We shall use this transformation in Step 4 below.

I wanted to start with the blue-outlined element as it demonstrates this structure using distinct elements. The green-outlined element is slightly strange, as it contains a widgetid that points back to itself. Since this obeys the same algorithm, it’s not a problem.

Step 3: Find the CSS property name that corresponds to the change we want

There is no trick here: it’s just a matter of going through a list of CSS properties and choosing one that “sounds about right” (there are often several ways to achieve the same visual result with CSS). After we choose the relevant properties, we need to convert them to camelCase as per documentation of dojo.style():

If the CSS style property is hyphenated, the JavaScript property is camelCased. For example: “font-size” becomes “fontSize”, and so on.

Note that Matlab R2016a comes bundled with Dojo v1.10.4, rev. f4fef70 (January 11 2015). Other Matlab releases will probably come with other Dojo versions. They will never be the latest version of Dojo, but rather a version that is 1-2 years old. We should keep this in mind when searching the Dojo documentation. We can get the current Dojo version as follows:

>> f=uifigure; drawnow; dojoVersion = matlab.internal.webwindowmanager.instance.windowList(1).executeJS('dojo.version'), delete(f)
dojoVersion =

This tells us that Dojo 1.10.4.f4fef70 is the currently-used version. We can use this information to browse the relevant documentation branch, as well as possibly use different Dojo functions/features.

Step 4: Manipulate the desired element from Matlab

In this demo, we’ll use a combination of several commands:

  • {matlab.internal.webwindow.}executeJS() – For sending JS commands to the uifigure.
  • dojo.query() – for finding nodes inside the DOM.
  • dojo.style() (deprecated since v1.8) – for applying styles to the required nodes of the DOM.
    Syntax: dojo.style(node, style, value);
  • dojo.setAttr (deprecated since v1.8) – for setting some non-style attributes.
    Syntax: dojo.setAttr(node, name, value);

Consider the following JS commands:

  • search the DOM for nodes having a data-tag attribute having the specified value, take their first child of type <div>, and return the value of this child’s widgetid attribute:
    ['dojo.getAttr(dojo.query("[data-tag^=''' data_tag '''] > div")[0],"widgetid")']
  • search the DOM for nodes with id of widgetid, then take the first element of the result and set its text alignment:
    ['dojo.style(dojo.query("#' widgetId(2:end-1) '")[0],"textAlign","center")']
  • append the CSS style defined by {SOME CSS STYLE} to the page (this style can later be used by nodes):
    ['document.head.innerHTML += ''<style>{SOME CSS STYLE}</style>''']);

Putting it all together

It should finally be possible to understand the code that appears in the animated screenshot at the top of this post:

%% 1. Get a handle to the webwindow:
win = struct(struct(struct(app).UIFigure).Controller).Container.CEF;
%% 2. Find which element of the DOM we want to edit (as before):
data_tag = char(struct(app.TextArea).Controller.ProxyView.PeerNode.getId);
%% 3. Manipulate the DOM via a JS command
% ^ always references a class="vc-widget" element.
widgetId = win.executeJS(['dojo.getAttr(dojo.query("[data-tag^=''' data_tag '''] > div")[0],"widgetid")']);
% Change font weight:
dojo_style_prefix = ['dojo.style(dojo.query("#' widgetId(2:end-1) '")[0],'];
win.executeJS([dojo_style_prefix '"fontWeight","900")']);
% Change font color:
win.executeJS([dojo_style_prefix '"color","yellow")']);
% Add an inline css to the HTML <head>:
win.executeJS(['document.head.innerHTML += ''<style>'...
    '@-webkit-keyframes mymove {50% {background-color: blue;}}'...
    '@keyframes mymove {50% {background-color: blue;}}</style>''']);
% Add animation to control:      
win.executeJS([dojo_style_prefix '"-webkit-animation","mymove 5s infinite")']);
% Change Dojo theme:
% Center text:
win.executeJS([dojo_style_prefix '"textAlign","center")']);

A similar method for center-aligning the items in a uilistbox is described here (using a CSS text-align directive).

The only thing we need to ensure before running code that manipulates the DOM, is that the page is fully loaded. The easiest way is to include a pause() of several seconds right after the createComponents(app) function (this will not interfere with the creation of the uifigure, as it happens on a different thread). I have been experimenting with another method involving webwindow‘s PageLoadFinishedCallback callback, but haven’t found anything elegant yet.

A few words of caution

In this demonstration, we invoked Dojo functions via the webwindow’s JS interface. For something like this to be possible, there has to exist some form of “bridge” that translates Matlab commands to JS commands issued to the browser and control the DOM. We also know that this bridge has to be bi-directional, because binding Matlab callbacks to uifigure actions (e.g. ButtonPushFcn for uibuttons) is a documented feature.

The extent to which the bridge might allow malicious code to control the Matlab process needs to be investigated. Until then, the ability of webwindows to execute arbitrary JS code should be considered a known vulnerability. For more information, see XSS and related vulnerabilities.

Final remarks

It should be clear now that there are actually lots of possibilities afforded by the new uifigures for user customizations. One would hope that future Matlab releases will expose easier and more robust hooks for CSS/JS customizations of uifigure contents. But until that time arrives (if ever), we can make do with the mechanism shown above.

Readers are welcome to visit the GitHub project dedicated to manipulating uifigures using the methods discussed in this post. Feel free to comment, suggest improvements and ideas, and of course submit some pull requests :)

p.s. – it turns out that uifigures can also display MathML. But this is a topic for another post…

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AppDesigner’s mlapp file formathttps://undocumentedmatlab.com/blog/appdesigner-mlapp-file-format https://undocumentedmatlab.com/blog/appdesigner-mlapp-file-format#comments Wed, 17 Aug 2016 17:00:04 +0000 http://undocumentedmatlab.com/?p=6613
Related posts:
  1. A couple of internal Matlab bugs and workarounds A couple of undocumented Matlab bugs have simple workarounds. ...
  2. Undocumented button highlighting Matlab button uicontrols can easily be highlighted by simply setting their Value property. ...
  3. uiundo – Matlab’s undocumented undo/redo manager The built-in uiundo function provides easy yet undocumented access to Matlab's powerful undo/redo functionality. This article explains its usage....
  4. Solving a Matlab hang problem A very common Matlab hang is apparently due to an internal timing problem that can easily be solved. ...
Six years ago, I exposed the fact that *.fig files are simply MAT files in disguise. This information, in addition to the data format that I explained in that article, can help us to introspect and modify FIG files without having to actually display the figure onscreen.

Matlab has changed significantly since 2010, and one of the exciting new additions is the AppDesigner, Matlab’s new GUI layout designer/editor. Unfortunately, AppDesigner still has quite a few limitations in functionality and behavior. I expect that this will improve in upcoming releases since AppDesigner is undergoing active development. But in the meantime, it makes sense to see whether we could directly introspect and potentially manipulate AppDesigner’s output (*.mlapp files), as we could with GUIDE’s output (*.fig files).

A situation for checking this was recently raised by a reader on the Answers forum: apparently AppDesigner becomes increasingly sluggish when the figure’s code has more than a few hundred lines of code (i.e., a very simplistic GUI). In today’s post I intend to show how we can explore the resulting *.mlapp file, and possibly manipulate it in a text editor outside AppDesigner.

Matlab's new AppDesigner (a somewhat outdated screenshot)

Matlab's new AppDesigner (a somewhat outdated screenshot)

The MLAPP file format

Apparently, *.mlapp files are simply ZIP files in disguise (note: not MAT files as for *.fig files). A typical MLAPP’s zipped contents contains the following files (note that this might be a bit different on different Matlab releases):

  • [Content_Types].xml – this seems to be application-independent:
    <?xml version="1.0" encoding="UTF-8" standalone="true"?>
    <Types xmlns="http://schemas.openxmlformats.org/package/2006/content-types">
       <Default Extension="mat" ContentType="application/vnd.mathworks.matlab.appDesigner.appModel+mat"/>
       <Default Extension="rels" ContentType="application/vnd.openxmlformats-package.relationships+xml"/>
       <Default Extension="xml" ContentType="application/vnd.mathworks.matlab.code.document+xml;plaincode=true"/>
       <Override ContentType="application/vnd.openxmlformats-package.core-properties+xml" PartName="/metadata/coreProperties.xml"/>
       <Override ContentType="application/vnd.mathworks.package.coreProperties+xml" PartName="/metadata/mwcoreProperties.xml"/>
       <Override ContentType="application/vnd.mathworks.package.corePropertiesExtension+xml" PartName="/metadata/mwcorePropertiesExtension.xml"/>
  • _rels/.rels – also application-independent:
    <?xml version="1.0" encoding="UTF-8" standalone="true"?>
    <Relationships xmlns="http://schemas.openxmlformats.org/package/2006/relationships">
       <Relationship Type="http://schemas.mathworks.com/matlab/code/2013/relationships/document" Target="matlab/document.xml" Id="rId1"/>
       <Relationship Type="http://schemas.mathworks.com/package/2012/relationships/coreProperties" Target="metadata/mwcoreProperties.xml" Id="rId2"/>
       <Relationship Type="http://schemas.mathworks.com/package/2014/relationships/corePropertiesExtension" Target="metadata/mwcorePropertiesExtension.xml" Id="rId3"/>
       <Relationship Type="http://schemas.openxmlformats.org/package/2006/relationships/metadata/core-properties" Target="metadata/coreProperties.xml" Id="rId4"/>
       <Relationship Type="http://schemas.mathworks.com/appDesigner/app/2014/relationships/appModel" Target="appdesigner/appModel.mat" Id="rId5"/>
  • metadata/coreProperties.xml – contains the timestamp of figure creation and last update:
    <?xml version="1.0" encoding="UTF-8" standalone="true"?>
    <cp:coreProperties xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:dcmitype="http://purl.org/dc/dcmitype/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cp="http://schemas.openxmlformats.org/package/2006/metadata/core-properties">
       <dcterms:created xsi:type="dcterms:W3CDTF">2016-08-01T18:20:26Z</dcterms:created>
       <dcterms:modified xsi:type="dcterms:W3CDTF">2016-08-01T18:20:27Z</dcterms:modified>
  • metadata/mwcoreProperties.xml – contains information on the generating Matlab release:
    <?xml version="1.0" encoding="UTF-8" standalone="true"?>
    <mwcoreProperties xmlns="http://schemas.mathworks.com/package/2012/coreProperties">
       <contentTypeFriendlyName>MATLAB App</contentTypeFriendlyName>
  • metadata/mwcorePropertiesExtension.xml – more information about the generating Matlab release. Note that the version number is not exactly the same as the main Matlab version number: here we have whereas the main Matlab version number is I do not know whether this is checked anywhere.
    <?xml version="1.0" encoding="UTF-8" standalone="true"?>
    <mwcoreProperties xmlns="http://schemas.mathworks.com/package/2014/corePropertiesExtension">
  • appdesigner/appModel.mat – This is a simple MAT file that holds a single Matlab object called “appData” (of type appdesigner.internal.serialization.app.AppData) the information about the uifigure, similar in concept to the *.fig files generated by the old GUIDE:
    >> d = load('C:\Yair\App3\appdesigner\appModel.mat')
    Warning: Functionality not supported with figures created with the uifigure function. For more information,
    see Graphics Support in App Designer.
    (Type "warning off MATLAB:ui:uifigure:UnsupportedAppDesignerFunctionality" to suppress this warning.)
    d = 
        appData: [1x1 appdesigner.internal.serialization.app.AppData]
    >> d.appData
    ans = 
      AppData with properties:
          UIFigure: [1x1 Figure]
          CodeData: [1x1 appdesigner.internal.codegeneration.model.CodeData]
          Metadata: [1x1 appdesigner.internal.serialization.app.AppMetadata]
        ToolboxVer: '2016a'
    >> d.appData.CodeData
    ans = 
      CodeData with properties:
        GeneratedClassName: 'App3'
                 Callbacks: [0x0 appdesigner.internal.codegeneration.model.AppCallback]
                StartupFcn: [1x1 appdesigner.internal.codegeneration.model.AppCallback]
           EditableSection: [1x1 appdesigner.internal.codegeneration.model.CodeSection]
                ToolboxVer: '2016a'
    >> d.appData.Metadata
    ans = 
      AppMetadata with properties:
        GroupHierarchy: {}
            ToolboxVer: '2016a'
  • matlab/document.xml – this file contains a copy of the figure’s classdef code in plain-text XML:
    <?xml version="1.0" encoding="UTF-8"?>
    <w:document xmlns:w="http://schemas.openxmlformats.org/wordprocessingml/2006/main">
                <w:pStyle w:val="code"/>
                   <![CDATA[classdef App2 < matlab.apps.AppBase % Properties that correspond to app components properties (Access = public) UIFigure matlab.ui.Figure UIAxes matlab.ui.control.UIAxes Button matlab.ui.control.Button CheckBox matlab.ui.control.CheckBox ListBoxLabel matlab.ui.control.Label ListBox matlab.ui.control.ListBox end methods (Access = public) function results = func(app) % Yair 1/8/2016 end end % App initialization and construction methods (Access = private) % Create UIFigure and components function createComponents(app) % Create UIFigure app.UIFigure = uifigure; app.UIFigure.Position = [100 100 640 480]; app.UIFigure.Name = 'UI Figure'; setAutoResize(app, app.UIFigure, true) % Create UIAxes app.UIAxes = uiaxes(app.UIFigure); title(app.UIAxes, 'Axes'); xlabel(app.UIAxes, 'X'); ylabel(app.UIAxes, 'Y'); app.UIAxes.Position = [23 273 300 185]; % Create Button app.Button = uibutton(app.UIFigure, 'push'); app.Button.Position = [491 378 100 22]; % Create CheckBox app.CheckBox = uicheckbox(app.UIFigure); app.CheckBox.Position = [491 304 76 15]; % Create ListBoxLabel app.ListBoxLabel = uilabel(app.UIFigure); app.ListBoxLabel.HorizontalAlignment = 'right'; app.ListBoxLabel.Position = [359 260 43 15]; app.ListBoxLabel.Text = 'List Box'; % Create ListBox app.ListBox = uilistbox(app.UIFigure); app.ListBox.Position = [417 203 100 74]; end end methods (Access = public) % Construct app function app = App2() % Create and configure components createComponents(app) % Register the app with App Designer registerApp(app, app.UIFigure) if nargout == 0 clear app end end % Code that executes before app deletion function delete(app) % Delete UIFigure when app is deleted delete(app.UIFigure) end end end]]>

I do not know why the code is duplicated, both in document.xml and (twice!) in appModel.mat. On the face of it, this does not seem to be a wise design decision.

Editing MLAPP files outside AppDesigner

We can presumably edit the app in an external editor as follow:

  1. Open the *.mlapp file in your favorite zip viewer (e.g., winzip or winrar). You may need to rename/copy the file as *.zip.
  2. Edit the contents of the contained matlab/document.xml file in your favorite text editor (Matlab’s editor for example)
  3. Load appdesigner/appModel.mat into Matlab workspace.
  4. Go to appData.CodeData.EditableSection.Code and update the cell array with the lines of your updated code (one cell element per user-code line).
  5. Do the same with appData.CodeData.GeneratedCode (if existing), which holds the same data as appData.CodeData.EditableSection.Code but also including the AppDesigner-generated [non-editable] code.
  6. Save the modified appData struct back into appdesigner/appModel.mat
  7. Update the zip file (*.mlapp) with the updated appModel.mat and document.xml

In theory, it is enough to extract the classdef code and same it in a simple *.m file, but then you would not be able to continue using AppDesigner to make layout modifications, and you would need to make all the changes manually in the m-file. If you wish to continue using AppDesigner after you modified the code, then you need to save it back into the *.mlapp file as explained above.

If you think this is not worth all the effort, then you’re probably right. But you must admit that it’s a bit fun to poke around…

One day maybe I’ll create wrapper utilities (mlapp2m and m2mlapp) that do all this automatically, in both directions. Or maybe one of my readers here will pick up the glove and do it sooner – are you up for the challenge?

Caveat Emptor

Note that the MLAPP file format is deeply undocumented and subject to change without prior notice in upcoming Matlab releases. In fact, MathWorker Chris Portal warns us that:

A word of caution for anyone that tries this undocumented/unsupported poking into their MLAPP file. Taking this approach will almost certainly guarantee your app to not load in one of the subsequent releases. Just something to consider in your off-roading expedition!

Then again, the same could have been said about the FIG and other binary file formats used by Matlab, which remained essentially the same for the past decade: Some internal field values may have changed but not the general format, and in any case the newer releases still accept files created with previous releases. For this reason, I speculate that future AppDesigners will accept MLAPP files created by older releases, possibly even hand-modified MLAPP files. Perhaps a CRC hash code of some sort will be expected, but I believe that any MLAPP that we modify today will still work in future releases. However, I could well be mistaken, so please be very careful with this knowledge. I trust that you can make up your own mind about whether it is worth the risk (and fun) or not.

AppDesigner is destined to gradually replace the aging GUIDE over the upcoming years. They currently coexist since AppDesigner (and its web-based uifigures) still does not contain all the functionality that GUIDE (and JFrame-based figures) provides (a few examples). I already posted a few short posts about AppDesigner (use the AppDesigner tag to list them), and today’s article is another in that series. Over the next few years I intend to publish more on AppDesigner and its associated new GUI framework (uifigures).

Zurich visit, 21-31 Aug 2016

I will be traveling to Zürich for a business trip between August 21-31. If you are in the Zürich area and wish to meet me to discuss how I could bring value to your work, then please email me (altmany at gmail).

https://undocumentedmatlab.com/blog/appdesigner-mlapp-file-format/feed 6
Customizing axes part 5 – origin crossover and labelshttps://undocumentedmatlab.com/blog/customizing-axes-part-5-origin-crossover-and-labels https://undocumentedmatlab.com/blog/customizing-axes-part-5-origin-crossover-and-labels#comments Wed, 27 Jul 2016 17:00:02 +0000 http://undocumentedmatlab.com/?p=6564
Related posts:
  1. Customizing axes rulers HG2 axes can be customized in numerous useful ways. This article explains how to customize the rulers. ...
  2. Customizing axes part 2 Matlab HG2 axes can be customized in many different ways. This article explains some of the undocumented aspects. ...
  3. Undocumented scatter plot jitter Matlab's scatter plot can automatically jitter data to enable better visualization of distribution density. ...
  4. Performance: accessing handle properties Handle object property access (get/set) performance can be significantly improved using dot-notation. ...
When HG2 graphics was finally released in R2014b, I posted a series of articles about various undocumented ways by which we can customize Matlab’s new graphic axes: rulers (axles), baseline, box-frame, grid, back-drop, and other aspects. Today I extend this series by showing how we can customize the axes rulers’ crossover location.

Non-default axes crossover location

Non-default axes crossover location

The documented/supported stuff

Until R2015b, we could only specify the axes’ YAxisLocation as 'left' (default) or 'right', and XAxisLocation as 'bottom' (default) or 'top'. For example:

x = -2*pi : .01 : 2*pi;
plot(x, sin(x));
hAxis = gca;
hAxis.YAxisLocation = 'left';    % 'left' (default) or 'right'
hAxis.XAxisLocation = 'bottom';  % 'bottom' (default) or 'top'

Default axis locations: axes crossover is non-fixed

Default axis locations: axes crossover is non-fixed

The crossover location is non-fixed in the sense that if we zoom or pan the plot, the axes crossover will remain at the bottom-left corner, which changes its coordinates depending on the X and Y axes limits.

Since R2016a, we can also specify 'origin' for either of these properties, such that the X and/or Y axes pass through the chart origin (0,0) location. For example, move the YAxisLocation to the origin:

hAxis.YAxisLocation = 'origin';

Y-axis location at origin: axes crossover at 0 (fixed), -1 (non-fixed)

Y-axis location at origin: axes crossover at 0 (fixed), -1 (non-fixed)

And similarly also for XAxisLocation:

hAxis.XAxisLocation = 'origin';

X and Y-axis location at origin: axes crossover fixed at (0,0)

X and Y-axis location at origin: axes crossover fixed at (0,0)

The axes crossover location is now fixed at the origin (0,0), so as we move or pan the plot, the crossover location changes its position in the chart area, without changing its coordinates. This functionality has existed in other graphic packages (outside Matlab) for a long time and until now required quite a bit of coding to emulate in Matlab, so I’m glad that we now have it in Matlab by simply updating a single property value. MathWorks did a very nice job here of dynamically updating the axles, ticks and labels as we pan (drag) the plot towards the edges – try it out!

The undocumented juicy stuff

So far for the documented stuff. The undocumented aspect is that we are not limited to using the (0,0) origin point as the fixed axes crossover location. We can use any x,y crossover location, using the FirstCrossoverValue property of the axes’ hidden XRuler and YRuler properties. In fact, we could do this since R2014b, when the new HG2 graphics engine was released, not just starting in R2016a!

% Set a fixed crossover location of (pi/2,-0.4)
hAxis.YRuler.FirstCrossoverValue = pi/2;
hAxis.XRuler.FirstCrossoverValue = -0.4;

Custom fixed axes crossover location at (π/2,-0.4)

Custom fixed axes crossover location at (π/2,-0.4)

For some reason (bug?), setting XAxisLocation/YAxisLocation to ‘origin’ has no visible effect in 3D plots, nor is there any corresponding ZAxisLocation property. Luckily, we can set the axes crossover location(s) in 3D plots using FirstCrossoverValue just as easily as for 2D plots. The rulers also have a SecondCrossoverValue property (default = -inf) that controls the Z-axis crossover, as Yaroslav pointed out in a comment below. For example:

N = 49;
x = linspace(-10,10,N);
M = peaks(N);

Default crossover locations at (-10,±10,-10)

Default crossover locations at (-10,±10,-10)

hAxis.XRuler.FirstCrossoverValue  = 0; % X crossover with Y axis
hAxis.YRuler.FirstCrossoverValue  = 0; % Y crossover with X axis
hAxis.ZRuler.FirstCrossoverValue  = 0; % Z crossover with X axis
hAxis.ZRuler.SecondCrossoverValue = 0; % Z crossover with Y axis

Custom fixed axes crossover location at (0,0,-10)

Custom fixed axes crossover location at (0,0,-10)

hAxis.XRuler.SecondCrossoverValue = 0; % X crossover with Z axis
hAxis.YRuler.SecondCrossoverValue = 0; % Y crossover with Z axis

Custom fixed axes crossover location at (0,0,0)

Custom fixed axes crossover location at (0,0,0)


Users will encounter the following unexpected behavior (bug?) when using either the documented *AxisLocation or the undocumented FirstCrossoverValue properties: when setting an x-label (using the xlabel function, or the internal axes properties), the label moves from the center of the axes (as happens when XAxisLocation=’top’ or ‘bottom’) to the right side of the axes, where the secondary label (e.g., exponent) usually appears, whereas the secondary label is moved to the left side of the axis:

Unexpected label positions

Unexpected label positions

In such cases, we would expect the labels locations to be reversed, with the main label on the left and the secondary label in its customary location on the right. The exact same situation occurs with the Y labels, where the main label unexpectedly appears at the top and the secondary at the bottom. Hopefully MathWorks will fix this in the next release (it is probably too late to make it into R2016b, but hopefully R2017a). Until then, we can simply switch the strings of the main and secondary label to make them appear at the expected locations:

% Switch the Y-axes labels:
ylabel(hAxis, '\times10^{3}');  % display secondary ylabel (x10^3) at top
set(hAxis.YRuler.SecondaryLabel, 'Visible','on', 'String','main y-label');  % main label at bottom
% Switch the X-axes labels:
xlabel(hAxis, '2^{nd} label');  % display secondary xlabel at right
set(hAxis.XRuler.SecondaryLabel, 'Visible','on', 'String','xlabel');  % main label at left

As can be seen from the screenshot, there’s an additional nuisance: the main label appears a bit larger than the axes font size (the secondary label uses the correct font size). This is because by default Matlab uses a 110% font-size for the main axes label, ostensibly to make them stand out. We can modify this default factor using the rulers’ hidden LabelFontSizeMultiplier property (default=1.1). For example:

hAxis.YRuler.LabelFontSizeMultiplier = 1;   % use 100% font-size (same as tick labels)
hAxis.XRuler.LabelFontSizeMultiplier = 0.8; % use 80% (smaller than standard) font-size

Note: I described the ruler objects in my first article of the axes series. Feel free to read it for more ideas on customizing the axes rulers.

https://undocumentedmatlab.com/blog/customizing-axes-part-5-origin-crossover-and-labels/feed 5
Customizing uifigures part 1https://undocumentedmatlab.com/blog/customizing-uifigures-part-1 https://undocumentedmatlab.com/blog/customizing-uifigures-part-1#comments Thu, 21 Jul 2016 10:32:51 +0000 http://undocumentedmatlab.com/?p=6554
Related posts:
  1. HG2 update HG2 appears to be nearing release. It is now a stable mature system. ...
  2. Customizing print setup Matlab figures print-setup can be customized to automatically prepare the figure for printing in a specific configuration...
  3. Plot LineSmoothing property LineSmoothing is a hidden and undocumented plot line property that creates anti-aliased (smooth unpixelized) lines in Matlab plots...
  4. getundoc – get undocumented object properties getundoc is a very simple utility that displays the hidden (undocumented) properties of a specified handle object....
Last month, I posted an article that summarized a variety of undocumented customizations to Matlab figure windows. As I noted in that post, Matlab figures have used Java JFrames as their underlying technology since R14 (over a decade ago), but this is expected to change a few years from now with the advent of web-based uifigures. uifigures first became available in late 2014 with the new App Designer preview (the much-awaited GUIDE replacement), and were officially released in R2016a. AppDesigner is actively being developed and we should expect to see exciting new features in upcoming Matlab releases.

Matlab's new AppDesigner (a somewhat outdated screenshot)

Matlab's new AppDesigner (a somewhat outdated screenshot)

However, while AppDesigner has become officially supported, the underlying technology used for the new uifigures remained undocumented. This is not surprising: MathWorks did a good job of retaining backward compatibility with the existing figure handle, and so a new uifigure returns a handle that programmatically appears similar to figure handles, reducing the migration cost when MathWorks decides (presumably around 2018-2020) that web-based (rather than Java-based) figures should become the default figure type. By keeping the underlying figure technology undocumented and retaining the documented top-level behavior (properties and methods of the figure handle), Matlab users who only use the documented interface should expect a relatively smooth transition at that time.

So does this mean that users who start using AppDesigner today (and especially in a few years when web figures become the default) can no longer enjoy the benefits of figure-based customization offered to the existing Java-based figure users (which I listed in last month’s post)? Absolutely not! All we need is to get a hook into the uifigure‘s underlying object and then we can start having fun.

The uifigure Controller

One way to do this is to use the uifigure handle’s hidden (private) Controller property (a matlab.ui.internal.controller.FigureController MCOS object whose source-code appears in %matlabroot%/toolbox/matlab/uitools/uicomponents/components/+matlab/+ui/+internal/+controller/).

Controller is not only a hidden but also a private property of the figure handle, so we cannot simply use the get function to get its value. This doesn’t stop us of course: We can get the controller object using either my getundoc utility or the builtin struct function (which returns private/protected properties as an undocumented feature):

>> hFig = uifigure('Name','Yair', ...);
>> figProps = struct(hFig);  % or getundoc(hFig)
Warning: Calling STRUCT on an object prevents the object from hiding its implementation details and should thus be
avoided. Use DISP or DISPLAY to see the visible public details of an object. See 'help struct' for more information.
(Type "warning off MATLAB:structOnObject" to suppress this warning.)
Warning: figure JavaFrame property will be obsoleted in a future release. For more information see
the JavaFrame resource on the MathWorks web site.
(Type "warning off MATLAB:HandleGraphics:ObsoletedProperty:JavaFrame" to suppress this warning.)
figProps = 
                      JavaFrame: []
                    JavaFrame_I: []
                       Position: [87 40 584 465]
                   PositionMode: 'auto'
                     Controller: [1x1 matlab.ui.internal.controller.FigureController]
                 ControllerMode: 'auto'
>> figProps.Controller
ans = 
  FigureController with properties:
       Canvas: []
    ProxyView: [1x1 struct]
>> figProps.Controller.ProxyView
ans = 
            PeerNode: [1x1 com.mathworks.peermodel.impl.PeerNodeImpl]
    PeerModelManager: [1x1 com.mathworks.peermodel.impl.PeerModelManagerImpl]
>> struct(figProps.Controller)
Warning: Calling STRUCT on an object prevents the object from hiding its implementation details and should thus be
avoided. Use DISP or DISPLAY to see the visible public details of an object. See 'help struct' for more information.
(Type "warning off MATLAB:structOnObject" to suppress this warning.)
ans = 
               PositionListener: [1x1 event.listener]
    ContainerPositionCorrection: [1 1 0 0]
                      Container: [1x1 matlab.ui.internal.controller.FigureContainer]
                         Canvas: []
                  IsClientReady: 1
              PeerEventListener: [1x1 handle.listener]
                      ProxyView: [1x1 struct]
                          Model: [1x1 Figure]
               ParentController: [0x0 handle]
      PropertyManagementService: [1x1 matlab.ui.internal.componentframework.services.core.propertymanagement.PropertyManagementService]
          IdentificationService: [1x1 matlab.ui.internal.componentframework.services.core.identification.WebIdentificationService]
           EventHandlingService: [1x1 matlab.ui.internal.componentframework.services.core.eventhandling.WebEventHandlingService]

I will discuss all the goodies here in a future post (if you are curious then feel free to start drilling in there yourself, I promise it won’t bite you…). However, today I wish to concentrate on more immediate benefits from a different venue:

The uifigure webwindow

uifigures are basically webpages rather than desktop windows (JFrames). They use an entirely different UI mechanism, based on HTML webpages served from a localhost webserver that runs CEF (Chromium Embedded Framework version 3.2272 on Chromium 41 in R2016a). This runs the so-called CEF client (apparently an adaptation of the CefClient sample application that comes with CEF; the relevant Matlab source-code is in %matlabroot%/toolbox/matlab/cefclient/). It uses the DOJO Javascript toolkit for UI controls visualization and interaction, rather than Java Swing as in the existing JFrame figures. I still don’t know if there is a way to combine the seemingly disparate sets of GUIs (namely adding Java-based controls to web-based figures or vice-versa).

Anyway, the important thing to note for my purposes today is that when a new uifigure is created, the above-mentioned Controller object is created, which in turn creates a new matlab.internal.webwindow. The webwindow class (%matlabroot%/toolbox/matlab/cefclient/+matlab/+internal/webwindow.m) is well-documented and easy to follow (although the non camel-cased class name escaped someone’s attention), and allows access to several important figure-level customizations.

The figure’s webwindow reference can be accessed via the Controller‘s Container‘s CEF property:

>> hFig = uifigure('Name','Yair', ...);
>> warning off MATLAB:structOnObject      % suppress warning (yes, we know it's naughty...)
>> figProps = struct(hFig);
>> controller = figProps.Controller;      % Controller is a private hidden property of Figure
>> controllerProps = struct(controller);
>> container = controllerProps.Container  % Container is a private hidden property of FigureController
container = 
  FigureContainer with properties:
    FigurePeerNode: [1x1 com.mathworks.peermodel.impl.PeerNodeImpl]
         Resizable: 1
          Position: [86 39 584 465]
               Tag: ''
             Title: 'Yair'
              Icon: 'C:\Program Files\Matlab\R2016a\toolbox\matlab\uitools\uicomponents\resources\images…'
           Visible: 1
               URL: 'http://localhost:31417/toolbox/matlab/uitools/uifigureappjs/componentContainer.html…'
              HTML: 'toolbox/matlab/uitools/uifigureappjs/componentContainer.html'
     ConnectorPort: 31417
         DebugPort: 0
     IsWindowValid: 1
>> win = container.CEF   % CEF is a regular (public) hidden property of FigureContainer
win = 
  webwindow with properties:
                             URL: 'http://localhost:31417/toolbox/matlab/uitools/uifigureappjs/component…'
                           Title: 'Yair'
                            Icon: 'C:\Program Files\Matlab\R2016a\toolbox\matlab\uitools\uicomponents\re…'
                        Position: [86 39 584 465]
     CustomWindowClosingCallback: @(o,e)this.Model.hgclose()
    CustomWindowResizingCallback: @(event,data)resizeRequest(this,event,data)
                  WindowResizing: []
                   WindowResized: []
                     FocusGained: []
                       FocusLost: []
                DownloadCallback: []
        PageLoadFinishedCallback: []
           MATLABClosingCallback: []
      MATLABWindowExitedCallback: []
             PopUpWindowCallback: []
             RemoteDebuggingPort: 0
                      CEFVersion: '3.2272.2072'
                 ChromiumVersion: '41.0.2272.76'
                   isWindowValid: 1
               isDownloadingFile: 0
                         isModal: 0
                  isWindowActive: 1
                   isAlwaysOnTop: 0
                     isAllActive: 1
                     isResizable: 1
                         MaxSize: []
                         MinSize: []
>> win.URL
ans =

An alternative way to get the webwindow is via the list of all webwindows stored by a central webwindowmanager:

webWindows = matlab.internal.webwindowmanager.instance.findAllWebwindows();  % manager method returning an array of all open webwindows
webWindows = matlab.internal.webwindowmanager.instance.windowList;           % equivalent alternative via manager's windowList property

Note that the controller, container and webwindow class objects, like most Matlab MCOS objects, have internal (hidden) properties/methods that you can explore. For example:

>> getundoc(win)
ans = 
                   Channel: [1x1 asyncio.Channel]
       CustomEventListener: [1x1 event.listener]
           InitialPosition: [100 100 600 400]
    JavaScriptReturnStatus: []
     JavaScriptReturnValue: []
     NewWindowBeingCreated: 0
          NewWindowCreated: 1
           UpdatedPosition: [86 39 584 465]
              WindowHandle: 2559756
                    newURL: 'http://localhost:31417/toolbox/matlab/uitools/uifigureappjs/componentContai…'

Using webwindow for figure-level customizations

We can use the methods of this webwindow object as follows:

win.setAlwaysOnTop(true);   % always on top of other figure windows (a.k.a. AOT)
win.setMaxSize([400,600]);  % enables resizing up to this size but not larger (default=[])
win.setMinSize([200,300]);  % enables resizing down to this size but not smaller (default=[])
win.setActivateCurrentWindow(false);  % disable interaction with this entire window
win.setActivateAllWindows(false);     % disable interaction with *ALL* uifigure (but not Java-based) windows
result = win.executeJS(jsStr, timeout);  % run JavaScript

In addition to these methods, we can set callback functions to various callbacks exposed by the webwindow as regular properties (too bad that some of their names [like the class name itself] don’t follow Matlab’s standard naming convention, in this case by appending “Fcn” or “Callback”):

win.FocusGained = @someCallbackFunc;
win.FocusLost = @anotherCallbackFunc;

In summary, while the possible customizations to Java-based figure windows are more extensive, the webwindow methods appear to cover most of the important ones. Since these functionalities (maximize/minimize, AOT, disable etc.) are now common to both the Java and web-based figures, I really hope that MathWorks will create fully-documented figure properties/methods for them. Now that there is no longer any question whether these features will be supported by the future technology, and since there is no question as to their usefulness, there is really no reason not to officially support them in both figure types. If you feel the same as I do, please let MathWorks know about this – if enough people request this, MathWorks will be more likely to add these features to one of the upcoming Matlab releases.

Warning: the internal implementation is subject to change across releases, so be careful to make your code cross-release compatible whenever you rely on one of Matlab’s internal objects.

Note that I labeled this post as “part 1” – I expect to post additional articles on uifigure customizations in upcoming years.

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Listbox selection hackshttps://undocumentedmatlab.com/blog/listbox-selection-hacks https://undocumentedmatlab.com/blog/listbox-selection-hacks#comments Wed, 13 Jul 2016 15:36:19 +0000 http://undocumentedmatlab.com/?p=6534
Related posts:
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  2. Continuous slider callback Matlab slider uicontrols do not enable a continuous-motion callback by default. This article explains how this can be achieved using undocumented features....
  3. Matlab and the Event Dispatch Thread (EDT) The Java Swing Event Dispatch Thread (EDT) is very important for Matlab GUI timings. This article explains the potential pitfalls and their avoidance using undocumented Matlab functionality....
  4. Customizing combobox popups Matlab combobox (dropdown) popups can be customized in a variety of ways. ...
Last week a reader on the CSSM newsgroup asked whether it is possible to programmatically deselect all listbox items. By default, Matlab listboxes enable a single item selection: trying to deselect it interactively has no effect, while trying to set the listbox’s Value property to empty ([]) results in the listbox disappearing and a warning issued to the Matlab console:

Single-selection Matlab listbox

>> hListbox = uicontrol('Style','list', 'String',{'item #1','item #2','item #3','item #4','item #5','item #6'});
>> set(hListbox,'Value',[]);
Warning: Single-selection 'listbox' control requires a scalar Value.
Control will not be rendered until all of its parameter values are valid
(Type "warning off MATLAB:hg:uicontrol:ValueMustBeScalar" to suppress this warning.)

The reader’s question was whether there is a way to bypass this limitation so that no listbox item will be selected. The answer to this question was provided by MathWorker Steve(n) Lord. Steve is a very long-time benefactor of the Matlab community with endless, tireless, and patient advise to queries small and large (way beyond the point that would have frustrated mere mortals). Steve pointed out that by default, Matlab listboxes only enable a single selection – not more and not less. However, when the listbox’s Max value is set to be >1, the listbox enables multiple-items selection, meaning that Value accepts and reports an array of item indices, and there is nothing that prevents this array from being empty (meaning no items selected):

>> hListbox = uicontrol('Style','list', 'Max',2, 'String',{'item #1','item #2','item #3','item #4','item #5','item #6'});
>> set(hListbox,'Value',[]);  % this is ok - listbox appears with no items selected

Note: actually, the listbox checks the value of MaxMin, but by default Min=0 and there is really no reason to modify this default value, just Max.

While this makes sense if you think about it, the existing documentation makes no mention of this fact:

The Max property value helps determine whether the user can select multiple items in the list box simultaneously. If Max – Min > 1, then the user can select multiple items simultaneously. Otherwise, the user cannot select multiple items simultaneously. If you set the Max and Min properties to allow multiple selections, then the Value property value can be a vector of indices.

Some readers might think that this feature is not really undocumented, since it does not directly conflict with the documentation text, but then so are many other undocumented aspects and features on this blog, which are not mentioned anywhere in the official documentation. I contend that if this feature is officially supported, then it deserves an explicit sentence in the official documentation.

However, the original CSSM reader wanted to preserve Matlab’s single-selection model while enabling deselection of an item. Basically, the reader wanted a selection model that enables 0 or 1 selections, but not 2 or more. This requires some tweaking using the listbox’s selection callback:

function test(hListbox, eventData)
   value = get(hListbox, 'Value');
   if numel(value) > 1
       set(hListbox, 'Value', value(1));

…or a callback-function version that is a bit better because it takes the previous selection into account and tries to set the new selection to the latest-selected item (this works in most cases, but not with shift-clicks as explained below):

function myCallbackFunc(hListbox, eventData)
   lastValue = getappdata(hListbox, 'lastValue');
   value = get(hListbox, 'Value');
   if ~isequal(value, lastValue)
      value2 = setdiff(value, lastValue);
      if isempty(value2)
         setappdata(hListbox, 'lastValue', value);
         value = value2(1);  % see quirk below
         setappdata(hListbox, 'lastValue', value);
         set(hListbox, 'Value', value);

This does the job of enabling only a single selection at the same time as allowing the user to interactively deselect that item (by ctrl-clicking it).

There’s just a few quirks: If the user selects a block of items (using shift-click), then only the second-from-top item in the block is selected, rather than the expected last-selected item. This is due to line #9 in the callback code which selects the first value. Matlab does not provide us with information about which item was clicked, so this cannot be helped using pure Matlab. Another quirk that cannot easily be solved using pure Matlab is the flicker that occurs when the selection changes and is then corrected by the callback.

We can solve both of these problems using the listbox’s underlying Java component, which we can retrieve using my findjobj utility:

% No need for the standard Matlab callback now
% Get the underlying Java component peer
jScrollPane = findjobj(h);
jListbox = jScrollPane.getViewport.getView;
jListbox = handle(jListbox,'CallbackProperties');  % enable callbacks
% Attach our callback to the listbox's Java peer
jListbox.ValueChangedCallback = {@myCallbackFunc, hListbox};
function myCallbackFunc(jListbox, eventData, hListbox)
   if numel(jListbox.getSelectedIndices) > 1
      set(hListbox, 'Value', jListbox.getLeadSelectionIndex+1);  % +1 because Java indices start at 0

We can use a similar mechanism to control other aspects of selection, for example to enable only up to 3 selections but no more etc.

We can use this underlying Java component peer for a few other useful selection-related hacks: First, we can use the peer’s RightSelectionEnabled property or setRightSelectionEnabled() method to enable the user to select by right-clicking listbox items (this is disabled by default):

jListbox.setRightSelectionEnabled(true);  % false by default
set(jListbox,'RightSelectionEnabled',true);  % equivalent alternative

A similarly useful property is DragSelectionEnabled (or the corresponding setDragSelectionEnabled() method), which is true by default, and controls whether the selection is extended to other items when the mouse drags an item up or down the listbox.

Finally, we can control whether in multi-selection mode we enable the user to only select a single contiguous block of items, or not (which is Matlab’s default behavior). This is set via the SelectionMode property (or associated setSelectionMode() method), as follows:

jListbox.setSelectionMode(1);  % equivalent alternative (less maintainable/readable, but simpler)

SINGLE_SELECTION (default for Max=1)SINGLE_INTERVAL_SELECTION (only possible with Java)MULTIPLE_INTERVAL_SELECTION (default for Max>1)
(Matlab default for Max=1)(only possible with Java)(Matlab default for Max>1)

Additional listbox customizations can be found in related posts on this blog (see links below), or in section 6.6 of my Matlab-Java Programming Secrets book (which is still selling nicely almost five years after its publication, to the pleasant surprise of my publisher…).

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Figure window customizationshttps://undocumentedmatlab.com/blog/figure-window-customizations https://undocumentedmatlab.com/blog/figure-window-customizations#respond Wed, 01 Jun 2016 08:00:11 +0000 http://undocumentedmatlab.com/?p=6439
Related posts:
  1. Minimize/maximize figure window Matlab figure windows can easily be maximized, minimized and restored using a bit of undocumented magic powder...
  2. FindJObj – find a Matlab component’s underlying Java object The FindJObj utility can be used to access and display the internal components of Matlab controls and containers. This article explains its uses and inner mechanism....
  3. Uitable sorting Matlab's uitables can be sortable using simple undocumented features...
  4. Frameless (undecorated) figure windows Matlab figure windows can be made undecorated (borderless, title-less). ...
A friend recently asked me, in light of my guesstimate that Java-based Matlab figures will be replaced by web-based figures sometime around 2018-2020, whether there are any “killer features” that make it worthwhile to use undocumented Java-based tricks today, despite the fact that they will probably break in 2-5 years. In my opinion, there are many such features; today I will focus on just a subset of them – those features that relate to the entire figure window.

Over the years I wrote many articles here about figure-level customizations, as well as an entire chapter in my Matlab-Java programming book. So today’s post will be a high-level overview, and users who are interested in any specific topic can visit the referenced links for the implementation details.

An undecorated Matlab figure window - one of many possible figure-level customizations
An undecorated Matlab figure window – one of many possible figure-level customizations


JavaFrame is an undocumented hidden property of the figure handle that provides access to the underlying Java window (JFrame) peer object’s reference. Since R2008a, a warning is issued whenever we retrieve this property:

>> jFrame = get(gcf,'JavaFrame');
Warning: figure JavaFrame property will be obsoleted in a future release.
For more information see the JavaFrame resource on the MathWorks web site.
(Type "warning off MATLAB:HandleGraphics:ObsoletedProperty:JavaFrame" to suppress this warning.) 

Until HG2 (R2014b+) we could suppress the warning by simply wrapping the figure handle within a handle() call, as explained here. Since R2014b we need to use the warning function to do this:

warning('off', 'MATLAB:HandleGraphics:ObsoletedProperty:JavaFrame');

We can do several things directly with the JavaFrame‘s properties and methods, including:

  • Maximize/minimize/restore the window, via the properties Maximized/Minimized (which accept and return a boolean (logical) value), or the corresponding methods jFrame.isMaximized(), isMinimized(), setMaximized(flag), setMinimized(flag). details
  • Modify the container to which the figure will be docked. By default this is the “Figures” container, but this can be changed to any user-specified container, or even to the “Editor”, using the GroupName property or its associated methods. See the related setFigDockGroup utility that I posted on the Matlab File exchange.
  • Remove the top separator line between the toolbar and the content-pane, to blend them together, via the jFrame.showTopSeparator(flag) method.
  • Retrieve a direct Java reference to the Matlab Desktop and the figure’s internal containers via the Desktop and FigurePanelContainer properties, respectively (we can also get those references by other means).
  • Retrieve a direct Java reference to the containing JFrame (Java window), as discussed below
  • A few other features that I will not discuss here

MathWorks have set up a dedicated webpage where you can specify how you are using JavaFrame and why it is important for you: http://www.mathworks.com/javaframe. I encourage you to use this webpage to tell MathWorks which features are important for you. This will help them to decide which functionality should be added to the new web-based figures.

JFrame window

The JavaFrame handle enables direct retrieval of the containing Java JFrame (window) reference, using several alternatives. Here are two of these alternatives (there are others):

% Alternative #1
>> jWindow = jFrame.getFigurePanelContainer.getTopLevelAncestor
jWindow = 
% Alternative #2
    jClient = jFrame.fFigureClient;  % This works up to R2011a
        jClient = jFrame.fHG1Client;  % This works from R2008b-R2014a
        jClient = jFrame.fHG2Client;  % This works from R2014b and up
jWindow = jClient.getWindow;

Customized menu items Customized menu items
Integrated figure status bar

Customized menu items (top) and figure status bar (bottom)

With the retrieved jWindow reference, we can do several additional interesting things:

  • Enable/disable the entire figure in a single go (details)
  • Remove/restore the window frame (borders and title bar), otherwise known as an “undecorated window” (details)
  • Set the figure window to be “Always-On-Top”, i.e. not occluded by any other window, via the AlwaysOnTop property, or the corresponding jWindow.isAlwaysOnTop(), setAlwaysOnTop(flag) methods.
  • Make the figure window fully or partially transparent (details). Note: this fails on R2013b/Java7 and higher due to a change in the way that transparency works in Java 7 compared to earlier releases; in other words blame Oracle’s Java, not MathWorks’ Matlab….
  • Blur/restore the figure window (details). This too works only up to R2013a.
  • Detect and handle window-level focus gain/loss events (details), as well as window-level mouse events (enter/exit/hover etc. – details).
  • Customize the figure’s menu bar – dynamic behavior, tooltips, highlights, keyboard shortcuts/accelerators, font colors/styles, callbacks, icons etc. (details1, details2)
  • Control figure docking in compiled (deployed) applications (details1, details2)
  • Display an integral figure status-bar with text and GUI controls (details1, details2).
  • A few other features that I will not discuss here

As you can see, there are numerous very interesting customizations that can be done to Matlab figures which rely on the undocumented implementation. Here are a couple of usage examples that you can easily adapt (follow the links above for additional details and usage examples):

jWindow.setEnabled(false);     % disable entire figure [true/false]
jWindow.setMinimized(true);    % minimize window [true/false]
jWindow.setMaximized(true);    % maximize window [true/false]
jWindow.setAlwaysOnTop(true);  % set to be always on top [true/false]
% Set a Matlab callback function to a window focus-gain event
hjWindow = handle(jWindow, 'CallbackProperties');
hjWindow.FocusGainedCallback = @myCallbackFunc;

In addition to the Java-based features above, some functionalities can also be achieved via direct OS manipulations, for example using Jan Simon’s great WindowAPI utility (Windows-only), although I typically prefer using the Java approach since it is cross-platform compatible.

Using all these features is super-easy, so there is not really a question of code complexity or technical risk – the main question is whether to accept the risk that the associated code will stop working when Matlab figures will eventually become web-based.

So is it worth the risk?

This is an excellent question. I contend that the answer depends on the specific use-case. In one project you may decide that it is indeed worth-while to use these undocumented features today, whereas in another GUI you may decide that it is not.

It might make sense to use the features above in any of the following circumstances:

  • If you need any of the features in your Matlab GUI today. In this case, you really have no alternative other than to use these features, since there is no documented way to achieve the required functionality.
  • If you do not plan to upgrade your Matlab release soon, or at least after the Java-based figures are discontinued in a few years. The commercial Matlab license is perpetual, enabling users to enjoy these features for as long as they continue using this Matlab release.
  • If you are compiling your Matlab program using the Matlab Compiler or Coder toolboxes. In such cases, the executable will remain static, until such time (if ever) that you decide to recompile it using a newer Matlab release. Users of the compiled code could continue to use the compiled undocumented features well into the future, for as long as their computers keep running. In such cases, we are not concerned with release compatibility issues.
  • If you accept the risk that some recoding may be necessary in the future, or that some functionality will degrade, for the added benefit that they provide your GUIs today.
  • If you are willing to code without MathWorks’ official support and endorsement, and accept the fact that they will not fix any internal bugs that you may discover which is related to these features.
  • If you wish to present a professional-grade GUI today, and worry about potential incompatibilities only if and when they eventually arrive, sometime in the future.

Here’s another twist to consider: do not take it for granted that when web-based uifigures replace Java-based figures all the documented functionality will work as-is on the new uifigures just as they have on the old figures. In fact, I personally believe that we will need to extensively modify our GUI code to make it compatible with the new uifigures. In other words, avoiding the undocumented hacks above will probably not save us from the need to recode (or at least adapt) our GUI, it will just reduce the necessary work somewhat. We encountered a similar situation with the graphics hacks that I exposed over the years: many people avoided them in the fear that they might someday break; then when R2014b came and HG2 graphics replaced HG1, it turned out that many of these supposedly risky hacks continued working in HG2 (examples: LooseInset, YLimInclude) whereas quite a bit of standard fully-documented Matlab functionality was broken and required some recoding. I believe that the lessons from the HG2 migration were well studied and assimilated by MathWorks, but realistically speaking we should not expect a 100% full-proof transition to uifigures.

Still, accepting the risk does not mean that we should bury our head in the sand. Whenever using any undocumented feature in your code, I strongly suggest to use defensive coding practices, such as wrapping your code within try-catch blocks. This way, even if the feature is removed in R2020a (or whenever), the program will still run, albeit with somewhat diminished functionality, or in other words, graceful degradation. For example:

    jFrame = get(hFig, 'JavaFrame');
    oldUnits = get(hFig, 'Units');
    set(hFig, 'Units','norm', 'Pos',[0,0,1,1]);
    set(hFig, 'Units',oldUnits);

Once again, I urge you to visit http://www.mathworks.com/javaframe and tell MathWorks which of the above features are important for you. The more users tell MathWorks that they depend on a specific feature, the more would MathWorks be likely to invest R&D efforts in enabling it in the future web-based figures.

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